Publications

Keener, W., M.A. Webber, T.M. Markowitz, M.P. Cotter, D. Maldini, R.H. Defran, M. Rice, A.J. Debich, A.R. Lang, D.L. Kelly, A.G. Kesaris, M. Bearzi, K. Causey, D. Anderson, L. Shuster, and D.W. Weller. 2023. Northern Range Expansion of California Coastal Bottlenose Dolphins (Tursiops truncatus). Aquatic Mammals 49(1): 49-43. doi: 10.1578/AM.49.1.2023.29

Plön, S. and R.W. Baird. 2022. Dwarf Sperm Whale, Kogia sima (Owen, 1866). In: Handbook of the Mammals of Europe. Edited by K. Hackländer and F.E. Zachos. Springer, Cham. doi: 10.1007/978-3-319-65038-8_91-1

Flynn, K.R., Huggins, J., Dobson, E., Wilkinson, K., Shaw, T., Rulon, B., Lemire Brooks, A., and Calambokidis, J. 2022. Ship strikes on large whales in the Salish Sea, Washington State: Insights from recent strandings and two well-documented fatal strikes by Washington ferries. Poster for 24^th Biennial Conference for Society of Marine Mammalogy. Palm Beach, Florida Aug 1-5, 2022. ID: SMM20221061.

Baird, R.W., J.K. Lerma, C.J. Cornforth, and K.A. Wood. 2022. An Unexpected Benefit from Drone-Assisted Fecal Sample Collection: Picking Up Subsurface Poop After It Floats to the Surface. Aquatic Mammals 48(6): 565-567. doi: 10.1578/AM.48.6.2022.565

Ryan, J.P., K.J. Benoit-Bird, W.K. Oestreich, P. Leary, K.B. Smith, C.M. Waluk, D.E. Cade, J.A. Fahlbusch, B.L. Southall, J.E. Joseph, T. Margolina, J. Calambokidis, A. DeVogelaere, and J.A. Goldbogen. 2022. Oceanic Giants Dance to Atmospheric Rhythms: Ephemeral Wind-Driven Resource Tracking by Blue Whales. Ecology Letters. doi: 10.1111/ele.14116

Fahlbusch, J.A., M.F. Czapanskiy, J. Calambokidis, D.E. Cade, B. Abrahms, E.L. Hazen, and J.A. Goldbogen. 2022. Blue Whales Increase Feeding Rates at Fine-Scale Ocean Features. Proceedings of the Royal Society B 289: 20221180. doi: 10.1098/rspb.2022.1180

Palacios, D.M., L.M. Irvine, B.A. Lagerquist, J.A. Fahlbusch, J. Calambokidis, S.M. Tomkiewicz, and B.R. Mate. 2022. A Satellite-Linked Tag for the Long-Term Monitoring of Diving Behavior in Large Whales. Animal Biotelemetry 10: 26. doi: 10.1186/s40317-022-00297-9

Norman, S.A., J.L. Huggins, D.M. Lambourn, L.D. Rhodes, M.M. Garner, J.L. Bolton, J.K. Gaydos, A. Scott, S. Raverty, and J. Calambokidis. 2022. Risk Factor Determination and Qualitative Risk Assessment of Mucormycosis in Harbor Porpoise, an Emergent Fungal Disease in Salish Sea Marine Mammals. Frontiers in Marine Science 9: 962857. doi: 10.3389/fmars.2022.962857

Melica, V., S. Atkinson, J. Calambokidis, D. Gendron, A. Lang, and J. Scordino. 2022. Naturally Stressed? Glucocorticoid Profiles in Blubber of Blue and Gray Whales in Resposne to Life History Parameters. Marine Mammal Science. doi: 10.1111/mms.12954

de Weerdt, J., J. Calambokidis, E. Pouplard, V. Pouey-Santalou, C. Patulny, B. Vanschoenwinkel, M. Kochzius, and P. Clapham. 2022. Abundance, Distribution, and Behavior of Humpback Whales (Megaptera novaeangliae) along the Pacific Coast of Nicaragua, Central America. Marine and Freshwater Research 73(8): 1041-1055. doi: 10.1071/MF21326

Elliser, C.R., D. Anderson, T. Derie, K. MacIver, and L. Shuster. 2022. Open Water Grouping Behavior in Harbour Seals (Phoca vitulina richardii) of the Salish Sea. Behaviour. doi: 10.1163/1568539X-bja10175

Wachtendonk, R., J. Calambokidis, and K. Flynn. 2022. Blue Whale Body Condition Assessed Over a 14-Year Period in the NE Pacific: Annual Variation and Connection to Measures of Ocean Productivity. Frontiers in Marine Science 9: 847032. doi: 10.3389/fmars.2022.847032

Ziegenhorn, M.A., K.E. Frasier, J.A. Hildebrand, E.M. Oleson, R.W. Baird, S.M. Wiggins, and S. Baumann-Pickering. 2022. Discriminating and Classifying Odontocete Echolocation Clicks in the Hawaiian Islands Using Machine Learning Methods. PLoS ONE 17(4): e0266424. doi: 10.1371/journal.pone.0266424

Pirotta, E., C.G. Booth, J. Calambokidis, D.P. Costa, J.A. Fahlbusch, A.S. Friedlaender, J.A. Goldbogen, J. Harwood, E.L. Hazen, L. New, J.A. Santora, S.L. Watwood, C. Wertman, and B.L. Southall. 2022. From Individual Responses to Population Effects: Integrating a Decade of Multidisciplinary Research on Blue Whales and Sonar. Animal Conservation. doi: 10.1111/acv.12785

Segre, P.S., W.T. Gough, E.A. Roulades, D.E. Cade, M.F. Czapanskiy, J. Fahlbusch, S.R. Kahane-Rapport, W.K. Oestrich, L. Bejder, K.C. Bierlich, J.A. Burrows, J. Calambokidis, E.M. Chenoweth, J. di Clemente, J.W. Durban, H. Fearnbach, F.E. Fish, A.S. Friedlaender, P. Hegelund, D.W. Johnston, D.P. Nowacek, M.G. Oudejans, G.S. Penry, J. Potvin, M. Simon, A. Stanworth, J.M. Straley, A. Szabo, S.K.A. Videsen, F. Visser, C.R. Weir, D.N. Wiley, and J.A. Goldbogen. 2022. Scaling of Maneuvering Performance in Baleen Whales: Larger Whales Outperform Expectations. Journal of Experimental Biology 225(5): jeb243224. doi: 10.1242/jeb.243224

Warlick, A.J., J.L. Huggins, D.M. Lambourn, D.A. Duffield, D.N. D'Alessandro, J.M. Rice, J. Calambokidis, M.B. Hanson, J.K. Gaydos, S.J. Jeffries, J.L. Olson, J.J. Scordino, A.M. Akmajian, M. Klope, S. Berta, S. Dubpernell, B. Carlson, S. Riemer, J. Hodder, V. Souze, A. Elsby, C. King, K. Wilkinson, T. Boothe, and S.A. Norman. 2022. Cetacean Strandings in the U.S. Pacific Northwest 2000-2019 Reveal Potential Linkages to Oceanographic Variability. Frontiers in Marine Science 9: 758812. doi: 10.3389/fmars.2022.758812

Durban, J.W., B.L. Southall, J. Calambokidis, C. Casey, H. Fearnbach, T.W. Joyce, J. Fahlbusch, M.G. Oudejans, S. Fregosi, A.S. Friedlaender, N.M. Kellar, and F. Visser. 2021. Integrating Remote Sensing Methods During Controlled Exposure Experiments to Quantify Group Responses of Dolphins to Navy Sonar. Marine Pollution Bulletin 174: 113194. doi: 10.1016/j.marpolbul.2021.113194

Tackaberry, J., E. Dobson, K. Flynn, T. Cheeseman, and J. Calambokidis. 2022. Low Resighting Rate of Entangled Humpback Whales Within the California, Oregon, and Washington Region Based on Photo-Identification and Long-Term Life History Data. Frontiers in Marine Science 8: 779448. doi: 10.3389/fmars.2021.779448

Cade, D.E., J.A. Fahlbusch, W.K. Oestreich, J. Ryan, J. Calambokidis, K.P. Findlay, A.S. Friedlaender, E.L. Hazen, S.M. Seakamela, and J.A. Goldbogen. 2021. Social Exploitation of Extensive, Ephemeral, Environmentally Controlled Prey Patches by Supergroups of Rorqual Whales. Animal Behaviour 182: 251-266. doi: 10.1016/j.anbehav.2021.09.013

Cheeseman, T., K. Southerland, J. Park, M. Olio, K. Flynn, J. Calambokidis, L. Jones, C. Garrigue, A. Frisch Jordán, A. Howard, W. Reade, J. Neilson, C. Gabriele, and P. Clapham. 2021. Advanced Image Recognition: A Fully Automated, High-Accuracy Photo-Identification Matching System for Humpback Whales. Mammalian Biology 2021: 1-15. doi: 10.1007/S42991-021-00180-9

Bierlich, K.C., J. Hewitt, C.N. Bird, R.S. Schick, A. Friedlaender, L.G. Torres, J. Dale, J. Goldbogen, A.J. Read, J. Calambokidis, and D.W. Johnston. 2021. Comparing Uncertainty Associated with 1-, 2-, and 3D Aerial Photogrammetry-Based Body Condition Measurements of Baleen Whales. Frontiers in Marine Science 8: 749943. doi: 10.3389/fmars.2021.749943

Jones-Todd, C.M., E. Pirotta, J.W. Durban, D.E. Claridge, R.W. Baird, E.A. Falcone, G.S. Schorr, S. Watwood, and L. Thomas. 2021. Discrete-Space Continuous-Time Models of Marine Mammal Exposure to Navy Sonar. Ecological Applications 32(1): e02475. doi: 10.1002/eap.2475

Savoca, M.S., M.F. Czapanskiy, S.R. Kahane-Rapport, W.T. Gough, J.A. Fahlbusch, K.C. Bierlich, P.S. Segre, J. Di Clemente, G.S. Penry, D.N. Wiley, J. Calambokidis, D.P. Nowacek, D.W. Johnston, N.D. Pyenson, A.S. Friedlaender, E.L. Hazen, and J.A. Goldbogen. 2021. Baleen Whale Prey Consumption Based on High-Resolution Foraging Measurements. Nature 599: 85-90. doi: 10.1038/s41586-021-03991-5

Carroll, E.L., M.R. McGowen, M.L. McCarthy, F.G. Marx, N. Aguilar, M.L. Dalebout, S. Dreyer, O.E. Gaggiotti, S.S. Hansen, A. van Helden, A.B. Onoufriou, R.W. Baird, C.S. Baker, S. Berrow, D. Cholewiak, D. Claridge, R. Constantine, N.J. Davison, C. Eira, R.W. Fordyce, J. Gatesy, G.J.G. Hofmeyr, V. Martin, P.A. Morin, C. Reyes, E. Rogan, M. Rosso, M.A. Silva, M.S. Springer, D. Steel, and M.T. Olsen. 2021. Speciation in the Deep: Genomics and Morphology Reveal a New Species of Beaked Whale Mesoplodon eueu. Proceedings of the Royal Society B 288: 20211213. doi: 10.1098/rspb.2021.1213

Teman, S.J., J.K. Gaydos, S.A. Norman, J.L. Huggins, D.M. Lambourn, J. Calambokidis, J.K.B. Ford, M.B. Hanson, M. Haulena, E. Zabek, P. Cottrell, L. Hoang, M. Morshed, M.M. Garner, and S. Raverty. 2021. Epizootiology of a Crytopcoccus gattii Outbreak in Porpoises and Dolphins From the Salish Sea. Diseases of Aquatic Organisms 146: 129-143. doi: 10.3354/dao03630

Schorr, G.S., E.A. Falcone, D.J. Moretti, and R.D. Andrews. 2015. Rebuttal to the Formal Comment on Schorr et al. 2014 Submitted by Tyack et al. 2015. PLoS ONE 10(12): e0142437. doi: 10.1371/journal.pone.0142437

Melica, V., S. Atkinson, J. Calambokidis, A. Lang, J. Scordino, and F. Mueter. 2021. Application of Endocrine Biomarkers to Update Information on Reproductive Physiology in Gray Whale (Eschrichtius robustus). PLoS ONE 16(8): e0255368. doi: 10.1371/journal.pone.0255368

Baird, R.W., S.D. Mahaffy, and J.K. Lerma. 2021. Site Fidelity, Spatial Use, and Behavior of Dwarf Sperm Whales in Hawaiian Waters: Using Small-Boat Surveys, Photo-Identification, and Unmanned Aerial Systems to Study a Difficult-to-Study Species. Marine Mammal Science 38(1): 326-348. doi: 10.1111/mms.12861

Foote, A.D., R. Hooper, A. Alexander, R.W. Baird, C.S. Baker, L. Ballance, J. Barlow, A. Brownlow, T. Collins, R. Constantine, L. Dalla Rosa, N.J. Davison, J.W. Durban, R. Esteban, L. Excoffier, S.L. Fordyce Martin, K.A. Forney, T. Gerrodette, M.T.P. Gilbert, C. Guinet, M.B. Hanson, S. Li, M.D. Martin, K.M. Robertson, F.I.P. Samarra, R. de Stephanis, S.B. Tavares, P. Tixier, J.A. Totterdell, P. Wade, J.B.W. Wolf, G. Fan, Y. Zhang, and P.A. Morin. 2021. Runs of Homozygosity in Killer Whale Genomes Provide a Global Record of Demographic Histories. Molecular Ecology 30(23): 6162-6177. doi: 10.1111/mec.16137

Corsi, E., J. Calambokidis, K.R. Flynn, and G.H. Steiger. 2021. Killer Whale Predatory Scarring on Mysticetes: A Comparison of Rake Marks Among Blue, Humpback, and Gray Whales in the Eastern North Pacific. Marine Mammal Science 38(1): 223-234. doi: 10.1111/mms.12863

Fader, J.E., R.W. Baird, A.L. Bradford, D.C. Dunn, K.A. Forney, and A.J. Read. 2021. Patterns of Depredation in the Hawai‘i Deep-Set Longline Fishery Informed by Fishery and False Killer Whale Behavior. Ecosphere 12(8): e03682. doi: 10.1002/ecs2.3682

Melica, V., S. Atkinson, D. Gendron, J. Calambokidis, and F. Mueter. 2021. Blubber Endocrine Profiles Provide Insights into Reproductive Biology in Blue Whales from the Eastern North Pacific Ocean. General and Comparative Endocrinology 310: 113830. doi: 10.1016/j.ygcen.2021.113830

Cade, D. E., S. M. Seakamela, K. P. Findlay, J. Fukunaga, S. R. Kahane-Rapport, J. D. Warren, J. Calambokidis, J. A. Fahlbusch, A. S. Friedlaender, E. L. Hazen, D. Kotze, S. McCue, M. Meÿer, W. K. Oestreich, M. G. Oudejans, C. Wilke, and J. A. Goldbogen. 2021. Predator-Scale Spatial Analysis of Intra-Patch Prey Distribution Reveals the Energetic Drivers of Rorqual Whale Super-Group Formation. Functional Ecology 35(4): 894-908. doi: 10.1111/1365-2435.13763

Van Cise, A. M., R. W. Baird, A. E. Harnish, J. J. Currie, S. H. Stack, T. Cullins, and A. M. Gorgone. 2021. Mark-Recapture Estimates Suggest Declines in Abundance of Common Bottlenose Dolphin Stocks in the Main Hawaiian Islands. Endangered Species Research 45: 37-53. doi: 10.3354/esr01117

Jefferson, T. A., D. M. Palacios, J. Calambokidis, C. S. Baker, C. E. Hayslip, P. A. Jones, B. A. Lagerquist, M. Jørgensen, and A. Schulman-Janiger. 2021. Sightings and Satellite Tracking of a Blue/Fin Whale Hybrid in its Wintering and Summering Ranges in the Eastern North Pacific. Advances in Oceanography & Marine Biology 2(4): 1-9. doi: 10.33552/AOMB.2021.02.000545

Shaff, J. F., and R. W. Baird. (2021). Diel and Lunar Variation in Diving Behavior of Rough-Toothed Dolphins (Steno bredanensis) off Kauaʻi, Hawaiʻi. Marine Mammal Science 37(4): 1261-1276. doi: 10.1111/mms.12811

Cioffi, W. R., N. J. Quick, H. J. Foley, D. M. Waples, Z. T. Swaim, J. M. Shearer, D. L. Webster, A. S. Friedlaender, B. L. Southall, R. W. Baird, D. P. Nowacek, and A. J. Read. 2021. Adult Male Cuvier's Beaked Whales (Ziphius cavirostris) Engage in Prolonged Bouts of Synchronous Diving. Marine Mammal Science 37(3): 1085-1100. doi: 10.1111/mms.12799

Hanson, M. B., C. K. Emmons, M. J. Ford, M. Everett, K. Parsons, L. K. Park, J. Hempelmann, D. M. Van Doornik, G. S. Schorr, J. K. Jacobsen, M. F. Sears, M. S. Sears, J. G. Sneva, R. W. Baird, and L. Barre. 2021. Endangered Predators and Endangered Prey: Seasonal Diet of Southern Resident Killer Whales. Plos One 16(3): e0247031. doi: 10.1371/journal.pone.0247031

Morin, P. A., B. R. Forester, K. A. Forney, C. A. Crossman, B. L. Hancock-Hanser, K. M. Robertson, L. G. Barrett-Lennard, R. W. Baird, J. Calambokidis, P. Gearin, M. B. Hanson, C. Schumacher, T. Harkins, M. C. Fontaine, B. L. Taylor, and K. M. Parsons. 2021. Population Structure in a Continuously Distributed Coastal Marine Species, the Harbor Porpoise, Based on Microhaplotypes Derived from Poor-Quality Samples. Molecular Ecology 30(6): 1457-1476. doi: 10.1111/mec.15827

Foley, H. J., K. Pacifici, R. W. Baird, D. L. Webster, Z. T. Swaim, and A. J. Read. 2021. Residency and Movement Patterns of Cuvier's Beaked Whales Ziphius cavirostris off Cape Hatteras, North Carolina, USA. Marine Ecology Progress Series 660: 203-216. doi: 10.3354/meps13593

Baird, R.W., D.B. Anderson, M.A. Kratofil, and D.L. Webster. 2021. Bringing the right fishermen to the table: indices of overlap between endangered false killer whales and nearshore fisheries in Hawai‘i. Biological Conservation 255. doi: 10.1016/j.biocon.2021.108975

Norman, S.A., D.M. Lambourn, J.L. Huggins, J.K. Gaydos, S. Dubpernell, S. Berta, J.K. Olson, V. Souze, A. Evans, B. Carlson, M. Johnson, R. Mayer, C. King, and A. Scott. 2021. Antibiotic Resistance of Bacteria in Two Marine Mammal Species, Harbor Seals and Harbor Porpoise, Living in an Urban Marine Ecosystem, the Salish Sea, Washington State, USA. Oceans 2021(2): 86-104. doi: 10.3390/oceans2010006

Pirotta, E., C. G. Booth, D. E. Cade, J. Calambokidis, D. P. Costa, J. A. Fahlbusch, A. S. Friedlaender, J. A. Goldbogen, J. Harwood, E. L. Hazen, L. New, and B. L. Southall. (2021). Context-dependent variability in the predicted daily energetic costs of disturbance for blue whales. Conservation Physiology 9(1): 1-15. doi: 10.1093/conphys/coaa137

Ramos, E.A., N. Castelblanco-Marínez, K.A. Collom, D.C. Barragán-Barrera, N. Garcés-Cuartas, B. Prezas-Hernández, D. Anderson, A. Jeffords, C.A. Niño-Torres, B. Carey, and T. Carey. 2020. Where the wild things are: First dedicated vessel-based expedition of marine mammals in Belize. Cahiers de Biologie Marine 61: 447-457. doi: 10.21411/CBM.A.58164306

Raverty, S., J. St. Leger, D.P. Noren, K.B. Huntington, D.S. Rotstein, F.M.D. Gulland, J.K.B. Ford, M.B. Hanson, D.M. Lambourn, J. Huggins, M.A. Delaney, L. Spaven, T. Rowles, L. Barre, P. Cottrell, G. Ellis, T. Goldstein, K. Terio, D. Duffield, J. Rice, and J.K. Gaydos. 2020. Pathology Findings and Correlation with Body Condition Index in Stranded Killer Whales (Orcinus orca) in the Northeastern Pacific and Hawaii From 2004 to 2013. PLoS ONE 15(12): e0242505. doi: 10.1371/journal.pone.0242505

Busquets-Vass, G., S.D. Newsome, M.A. Pardo, J. Calambokidis, S. Aguíñiga-García, D. Páez-Rosas, J. Gómez-Gutiérrez, L.M. Enríquez-Paredes, and D. Gendron. (2021). Isotope-Based Inferences of the Seasonal Foraging and Migratory Strategies of Blue Whales in the Eastern Pacific Ocean. Marine Environmental Research: 105201. doi: 10.1016/j.marenvres.2020.105201

Franklin, T., W. Franklin, L. Brooks, P. Harrison, D. Burns, J. Holmberg, and J. Calambokidis. 2020. Photo-Identification of Individual Humpback Whales (Megaptera novaeangliae) Using All Available Natural Marks: Implications for Misidentification and Automated Algorithm Matching Technology. Journal of Cetacean Research and Management 21: 71-83. doi: 10.47536/jcrm.v21i1.186

Oestreich, W.K., J.A. Fahlbusch, D.E. Cade, J. Calambokidis, T. Margolina, J. Joseph, A.S. Friedlaender, M.F. McKenna, A.K. Stimpert, B.L. Southall, J.A. Goldbogen, and J.P. Ryan. 2020. Animal-Borne Metrics Enable Acoustic Detection of Blue Whale Migration. Current Biology 30(23): 4773-4779. doi: 10.1016/j.cub.2020.08.105

Huggins, J.L., M.M. Garner, S.A. Raverty, D.M. Lambourn, S.A. Norman, L.D. Rhodes, J.K. Gaydos, J.K. Olson, M. Haulena, and M.B. Hanson. 2020. The Emergence of Mucormycosis in Free-Ranging Marine Mammals of the Pacific Northwest. Frontiers in Marine Science 7: 555. doi: 10.3389/fmars.2020.00555.

Elliser, C.R., J. Calambokidis, D.N. D'Alessandro, D.A. Duffield, J.L. Huggins, J. Rice, I. Szczepaniak, and M. Webber. 2020. Prey-Related Asphyxiation in Harbor Porpoises (Phocoena phocoena) Along the U.S. West Coast: Importance of American Shad (Alosa sapidissima) on Adult Female Harbor Porpoise Mortality. Oceans 2020 1(3): 94-113. doi:10.3390/oceans1030008

Baird, R.W., and D.L. Webster. 2020. Using Dolphins to Catch Tuna: Assessment of Associations Between Pantropical Spotted Dolphins and Yellowfin Tuna Hook and Line Fisheries in Hawai‘i. Fisheries Research 230: 105652. doi: 10.1016/j.fishres.2020.105652

Stack, S.H., G.L. Olson, V. Neamtu, A.F. Machernis, R.W. Baird, and J.J. Currie. 2020. Identifying Spinner Dolphin Stenella longirostris longirostris Movement and Behavioral Patterns to Inform Conservation Strategies in Maui Nui, Hawai‘i. Marine Ecology Progress Series 644: 187-197. doi: 10.3354/meps13347

Anderson, D., R.W. Baird, A.L. Bradford, and E.M. Oleson. 2020. Is It All About the Haul? Pelagic False Killer Whale Interactions with Longline Fisheries in the Central North Pacific. Fisheries Research 230: 105665. doi: 10.1016/j.fishres.2020.105665

Apprill, A., C.A. Miller, A.M. Van Cise, J.M. U'Ren, M.S. Leslie, L. Weber, R.W. Baird, J. Robbins, S. Landry, A. Bogomolni, and G. Waring. 2020. Marine Mammal Skin Microbiotas are Influenced by Host Phylogeny. Royal Society Open Science 7: 192046. doi: 10.1098/rsos.192046

Kratofil, M.A., G.M. Ylitalo, S.D. Mahaffy, K.L. West, and R.W. Baird. 2020. Life History and Social Structure as Drivers of Persistent Organic Pollutant Levels and Stable Isotopes in Hawaiian False Killer Whales (Pseudorca crassidens). Science of the Total Environment 733: 138880. doi: 10.1016/j.scitotenv.2020.138880

Weideman, H., C. Stewart, J. Parham, J. Holmberg, K. Flynn, J. Calambokidis, D. B. Paul, A. Bedetti, M. Henley, F. Pope, and J. Lepirei. 2020. Extracting Identifying Contours for African Elephants and Humpback Whales Using a Learned Appearance Model. In the IEEE Winter Conference on Applications of Computer Vision (pp. 1276-1285). 

Kahane-Rapport, S. R., M. S. Savoca, D. E. Cade, P. S. Segre, K. C. Bierlich, J. Calambokidis, J. Dale, J. A. Fahlbusch, A. S. Friedlaender, D. W. Johnston, A. J. Werth, and J. A. Goldbogen. 2020. Lunge Filter Feeding Biomechanics Constrain Rorqual Foraging Ecology Across Scale. Journal of Experimental Biology 223(20). doi: 10.1242/jeb.224196

Flammang, B. E., S. Marras, E. J. Anderson, O. Lehmkuhl, A. Mukherjee, D. E. Cade, M. Beckert, J. H. Nadler, G. Houzeaux, M. Vázquez, H. E. Amplo, J. Calambokidis, A. S. Friedlaender, and J. A. Goldbogen. 2020. Remoras Pick Where They Stick on Blue Whales. Journal of Experimental Biology 223(20). doi: 10.1242/jeb.226654

Ryan, C., M. Cohen, and R.W. Baird. 2020. Southernmost Record of False Killer Whale (Pseudorca crassidens). Aquatic Mammals 46(1): 111-113. doi: 10.1578/AM.46.1.2020.111

D'Agnese, E., D. Lambourn, J. Rice, D. Duffield, J. Huggins, T. Spraker, S. Raverty, T. Kuzmina, M.E. Grigg, K. Wilkinson, S. Jeffries, and W. Smith. 2020. Reemergence of Guadalupe Fur Seals in the U.S. Pacific Northwest: The Epidemiology of Stranding Events During 2005-2016. Marine Mammal Science 36(3): 828-845 doi: 10.1111/mms.12678

Segre, P.S., J. Potvin, D.E. Cade, J. Calambokidis, J. Di Clemente, F.E. Fish, A.S. Friedlaender, W.T. Gough, S.R. Kahane-Rapport, C. Oliveira, S.E. Parks, G.S. Penry, M. Simon, A.K. Stimpert, D.N. Wiley, K.C. Bierlich, P.T. Madsen, and J.A. Goldbogen. 2020. Energetic and Physical Limitations on the Breaching Performance of Large Whales. eLife 9: e51760. doi: 10.7554/elife.51760

Howe, M., M.O. Lammers, and R.W. Baird. 2019. Participatory Science and Directed Survey Methods: A Case Study with Odontocetes in the Maui Nui Region of the Hawaiian Islands. Journal of Cetacean Research and Management 20: 101-109. doi: 10.47536/jcrm.v20i1.235

Santora, J.A., N.J. Mantua, I.D. Schroeder, J.C. Field, E.L. Hazen, S.J. Bograd, W.J. Sydeman, B.K. Well, J. Calambokidis, L. Saez, D. Lawson, and K.A. Forney. 2020. Habitat Compression and Ecosystem Shifts as Potential Links Between Marine Heatwave and Record Whale Entanglements. Nature Communications 11: 536. doi: 10.1038/s41467-019-14215-w

Szesciorka A.R., A.N. Allen, J. Calambokidis, J. Fahlbusch, M.F. McKenna, and B. Southall. 2019. A Case Study of a Near Vessel Strike of a Blue Whale: Perceptual Cues and Fine-Scale Aspects of Behavioral Avoidance. Frontiers in Marine Science 6: 761. doi: 10.3389/fmars.2019.00761

Andrews, R.D., R.W. Baird, J. Calambokidis, C.E.C. Goertz, F.M. Gulland, M.P. Heide-Jorgensen, S.K. Hooker, M. Johnson, B. Mate, Y. Mitani, D.P. Nowacek, K. Owen, L.T. Quakenbush, S. Raverty, J. Robbins, G.S. Schorr, O.V. Shpak, F.I. Townsend, JR, M. Uhart, R.W. Wells, and A.N. Zerbini. 2019. Best Practice Guidelines for Cetacean Tagging. Journal of Cetacean Research and Management 20: 27–66. doi: 10.47536/jcrm.v20i1.237

Martien, K.K., B.L. Taylor, S.J. Chivers, S.D. Mahaffy, A.M. Gorgone, and R.W. Baird. 2019. Fidelity to Natal Social Groups and Mating Within and Between Social Groups in an Endangered False Killer Whale Population. Endangered Species Research 40: 219-230. doi: 10.3354/esr00995

Owen, K., R.D. Andrews, R.W. Baird, G.S. Schorr, and D.L. Webster. 2019. Lunar Cycles Influence the Diving Behavior and Habitat Use of Short-Finned Pilot Whales Around the Main Hawaiian Islands. Marine Ecology Progress Series 629: 193-206. doi: 10.3354/meps13123

Friedlaender, A.S., M.T. Bowers, D. Cade, E.L. Hazen, A.K. Stimpert, A.N. Allen, J. Calambokidis, J. Fahlbusch, P. Segre, F. Visser, B.L. Southall, and J.A. Goldbogen. 2019. The Advantages of Diving Deep: Fin Whales Quadruple Their Energy Intake When Targeting Deep Krill Patches. Functional Ecology 34(2): 497-506. doi: 10.1111/1365-2435.13471

Zerbini A.N., G. Adams, J. Best, P.J. Clapham, J.A. Jackson, and A.E. Punt. 2019. Assessing the Recovery of an Antarctic Predator from Historical Exploitation. Royal Society Open Science 6: 190368. doi: 10.1098/rsos.190368

Harnish, A.E., J. Ault, C. Babbitt, F.M.D. Gulland, P.C. Johnson, N.L. Shaughnessy, K.A. Wood and R.W. Baird. 2019. Survival of a Common Bottlenose Dolphin (Tursiops truncatus) Calf with a Presumptive Gunshot Wound to the Head. Aquatic Mammals 45(5): 543-548 doi: 10.1578/AM.45.5.2019.543

Calambokidis, J., J.A. Fahlbusch, A.R. Szesciorka, B.L. Southall, D.E. Cade, A.S. Friedlander, and J.A. Goldbogen. 2019. Differential Vulnerability to Ship Strikes between Day and Night for Blue, Fin, and Humpback Whales Based on Dive and Movement Data from Medium Duration Archival Tags. Frontiers in Marine Science 6: 503 doi: 10.3389/fmars.2019.00543

Baird, R.W. 2019. How we learn about Hawaii's dolphin and whale populations. Hawaii Fishing News 44(9):31-32.

Archer, F.I., R.L. Brownell Jr., B.L. Hancock-Hanser, P.A. Morin, K.M. Robertson, K.K. Sherman, J. Calambokidis, J. Urbán R., P.E. Rosel, S.A. Mizroch, S. Panigada, and B.L. Taylor. 2019. Revision of Fin Whale Balaenoptera physalus (Linneaus, 1758) Subspecies Using Genetics. Journal of Mammalogy 100(5): 1653-1670. doi: 10.1093/jmammal/gyz121

Flynn, K.R. and Calambokidis, J. 2019. Lessons from Placing an Observer on Commercial Cargo Ships Off the U.S. West Coast: Utility as an Observation Platform and Insight Into Ship Strike Vulnerability. Frontiers in Marine Science 6: 501 doi: 10.3389/fmars.2019.00501

Baird, R.W. 2019. Behavior and ecology of not-so-social odontocetes: Cuvier's and Blainville's beaked whales. In: Ethology and Behavioral Ecology of Toothed Whales and Dolphins, the Odontocetes. Edited by B. Würsig. Springer.

Redfern, J.V., T.J. Moore, E.A. Becker, J. Calambokidis, S.P. Hastings, L.M. Irvine, B.R. Mate, and D.M. Palacios. 2019. Evaluating Stakeholder-Derived Strategies to Reduce the Risk of Ships Striking Whales. Diversity and Distributions 25(10): 1575-1585. doi: 10.1111/ddi.12958

Baird, R.W., D.L. Webster, S.M. Jarvis, E.E. Henderson, S.L. Watwood, S.D. Mahaffy, B.D. Guenther, J.K. Lerma, C.J. Cornforth, A.W. Vanderzee, and D.B. Anderson. 2019. Odontocete studies on the Pacific Missile Range Facility in August 2018: satellite-tagging, photo-identification, and passive acoustic monitoring. Prepared for Commander, Pacific Fleet, under Contract No. N62470-15-D-8006 Task Order 6274218F0107 issued to HDR Inc., Honolulu, HI. 

Baird, R.W., D.L. Webster, Z.T. Swaim, J.M. Aschettino, H.J. Foley, W.R. Cioffi, D.B. Anderson, and A.J. Read. 2019. Spatial Use of Cuvier's Beaked Whales and Short-finned Pilot Whales Satellite Tagged off Cape Hatteras, North Carolina: 2018 Annual Progress Report. Prepared for U.S. Fleet Forces Command. Submitted to Naval Facilities Engineering Command Atlantic, Norfolk, Virginia, under Contract No. N62470-15-D-8006, Task Order 18F4036, issued to HDR Inc., Virginia Beach, Virginia. June 2019.

Van Cise, A.M., R.W. Baird, C.S. Baker, S. Cerchio, D. Claridge, R. Fielding, B. Hancock-Hanser, J. Marrero, K.K. Martien, A.A. Mignucci-Giannoni, E.M. Oleson, M. Oremus, M.M. Poole, P.E. Rosel, B.L. Taylor, and P.A. Morin. 2019. Oceanographic Barriers, Divergence, and Admixture: Phylogeography and Taxonomy of Two Putative Subspecies of Short-Finned Pilot Whale. Molecular Ecology 28(11): 2886-2902. doi: 10.1111/mec.15107

Foote, A.D., M.D. Martin, M. Louis, G. Pacheco, K.M. Robertson, M.S. Sinding, A.R. Amaral, R.W. Baird, C.S. Baker, L. Ballance, J. Barlow, A. Brownlow, T. Collins, R. Constantine, W. Dabin, L. Dalla Rosa, N.J. Davison, J.W. Durban, R. Esteban, S.H. Ferguson, T. Gerrodette, C. Guinet, M.B. Hanson, W. Hoggard, C.J.D. Matthews, F.I.P. Samarra, R. de Stephanis, S.B. Tavares, P. Tixier, J.A. Totterdell, P. Wade, L. Excoffier, M.T.P Gilbert, J.B.W. Wolf, and P.A. Morin. 2019. Killer Whale Genomes Reveal a Complex History of Recurrent Admixture and Vicariance. Molecular Ecology 28(14): 3427-3444. doi:10.1111/mec.15099

Thorne, L.H., R.W. Baird, D.L. Webster, J.E. Stepanuk, and A.J. Read. 2019. Predicting Fisheries Bycatch: A Case Study and Field Test for Pilot Whales in a Pelagic Longline Fishery. Diversity and Distributions 25(6): 909-923. doi.org/10.1111/ddi.12912

Jarvis, S.M., E.E. Henderson, T.J. Brookens and D.L. Webster. 2019. Acoustic Observation of the Reaction of Rough-Toothed Dolphin (Steno bredanensis) to Vocalizations, Most Likely from Killer Whales (Orcinus orca), off Kauaʻi. Marine Mammal Science 35(5): 1092-1098. doi:10.1111/mms.12580

Sweeney, D.A., S.L. DeRuiter, Y.J. McNamara-Oh, T.A. Marques, P. Arranz, and J. Calambokidis. 2019. Automated Peak Detection Method for Behavioral Event Identification: Detecting Balaenoptera musculus and Grampus griseus Feeding Attempts. Animal Biotelemetry 7: 7. doi: 10.1186/s40317-019-0169-3

Arranz, P., K.J. Benoit-Bird, A.S. Friedlander, E.L. Hazen, J.A. Goldbogen, A.K. Stimpert, S.L. DeRuiter, J. Calambokidis, B.L. Southall, A. Fahlman, and P.L. Tyack. 2019. Diving Behavior and Fine-Scale Kinematics of Free-Ranging Risso's Dolphins Foraging in Shallow and Deep-Water Habitats. Frontiers in Ecology and Evolution 7: 53 doi: 10.3389/fevo.2019.00053 

Harnish, A.E., J. Ault, C. Babbitt, F.M.D. Gulland, P.C. Johnson, N.L. Shaughnessy and R.W. Baird. 2019. Survival of a common bottlenose dolphin calf with a gunshot wound to the melon. Document PSRG-2019-17 presented to the Pacific Scientific Review Group, March 5-7, 2019, Olympia, WA.

Baird, R.W., and D.L. Webster. 2019. Using dolphins to catch tuna: assessment of interactions between pantropical spotted dolphins and hook and line fisheries in Hawai'i. Document PSRG-2019-16 presented to the Pacific Scientific Review Group, March 5-7, 2019, Olympia, WA.

Baird, R.W. 2019. The perils of relying on handling techniques to reduce bycatch in a partially observed fishery: a potential fatal flaw in the False Killer Whale Take Reduction Plan. Document PSRG-2019-14 presented to the Pacific Scientific Review Group, March 5-7, 2019, Olympia, WA.

Baird, R.W., and D.L. Webster. 2019. Movements of satellite-tagged pantropical spotted dolphins in relation to stock boundaries in Hawaiian waters. Document PSRG-2019-15 submitted to the Pacific Scientific Review Group, March 5-7, 2019, Olympia, WA.

Shearer, J.M., N.J. Quick, W.R. Cioffi, R.W. Baird, D.L Webster, H.J. Foley, Z.T. Swaim, D.M. Waples, J.T. Bell and A.J. Read. 2019. Diving Behavior of Cuvier’s Beaked Whales (Ziphius cavirostris) off Cape Hatteras, North Carolina. Royal Society Open Science 6: 181728. doi: 10.1098/rsos.181728

Southall, B. L., S.L. DeRuiter, A. Friedlaender, A.K. Stimpert, J.A. Goldbogen, E. Hazen, C. Casey, S. Fregosi, D.E. Cade, A.N. Allen, C.M. Harris, G. Schorr, D. Moretti, S. Guan, and  J. Calambokidis. 2019. Behavioral Responses of Individual Blue Whales (Balaenoptera musculus) to Midfrequency Military Sonar. Journal of Experimental Biology 222(5).  doi: 10.1242/jeb.190637

Lewis, L.A., J. Calambokidis, A.K. Stimpert, J. Fahlbusch, A.S. Friedlaender, M.F. McKenna, S.L. Mesnick, E.M. Oleson, B.L. Southall, A.R. Szesciorka, and A. Širović. 2018. Context-Dependent Variability in Blue Whale Acoustic Behaviour. Royal Society Open Science 5(8): 180241. doi: 10.1098/rsos.180241

Segre, P.S., D.E. Cade, J. Calambokidis, F.E. Fish, A.S. Friedlaender, J. Potvin, and J.A. Goldbogen. 2018. Body Flexibility Enhances Maneuverability in the World’s Largest Predator. Integrative and Comparative Biology 59(1): 48-60. doi: 10.1093/icb/icy121

Yahn, S.N., R.W. Baird, S.D. Mahaffy and D.L. Webster. 2019. How to Tell Them Apart? Discriminating Tropical Blackfish Species using Fin and Body Measurements from Photographs Taken at Sea. Marine Mammal Science 35(4): 1232-1252. doi: 10.1111/mms.12584

Bernaldo de Quirós, Y., A. Fernandez, R.W. Baird, R.L. Brownell, N. Aguilar de Soto, D. Allen, M. Arbelo, M. Arregui, A. Costidis, A. Fahlman, A. Frantzis, F.M.D. Gulland, M. Iñiguez, M. Johnson, A. Komnenou, H. Koopman, D.A. Pabst, W.D. Roe, E. Sierra, M. Tejedor, and G. Schorr. 2019. Advances in Research on the Impacts of Anti-Submarine Sonar on Beaked Whales. Proceedings of the Royal Society B 286: 20182533. doi: 10.1098/rspb.2018.2533

Hooker, S.K., N. Aguilar De Soto, R.W. Baird, E.L. Carroll, D. Claridge, L. Feyrer, P.J.O. Miller, A. Onoufriou, G. Schorr, E. Siegal, and H. Whitehead. 2019. Future Directions in Research on Beaked Whales. Frontiers in Marine Science 5: 514. doi: 10.3389/fmars.2018.00514

Van Cise, A.M., S.D. Mahaffy, R.W. Baird, T.A. Mooney, and J. Barlow. 2018. Song of My People: Dialect Differences Among Sympatric Groups of Short-Finned Pilot Whales in Hawai'i. Behavioral Ecology and Sociobiology 72: 193. doi: 10.1007/s00265-018-2596-1

Mahaffy, S.D., and R.W. Baird. 2019. Long-Term Mom/Calf Associations in Rough-Toothed Dolphins off the Island of Hawaiʻi: Evidence of a Stable Matrilineal Social Structure in a Deep-Water Dolphin? Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019.

Howe, M., M.O. Lammers, and R.W. Baird. 2019. Participatory Science and Directed Survey Methods: A Case Study with Odontocetes in the Maui Nui Region of the Hawaiian Islands. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019. 

Baird, R.W. 2018. Pseudorca crassidens. The IUCN Red List of Threatened Species 2018: e.T18596A50371251. doi: 10.2305/IUCN.UK.2018-2.RLTS.T18596A50371251.en 

Calambokidis, J., J. Fahlbusch, A. Szesciorka, B. Southall, D. Cade, A. Friedlaender, and J. Goldbogen. 2019. Differential Vulnerability to Ship Strikes Between Day and Night for Blue, Fin, and Humpback Whales Based on Dive and Movement Data from Medium Duration Archival Tags. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019. 

Flynn, K., D. Sandilands, J. Huggins, J. Tackaberry, D. Lambourn, S. Jeffries, K. Wilkinson, and J. Calambokidis. 2019. Increase in Large Whale Entanglements in 2018 in the Pacific Northwest: Improved Reporting & Changes in Whale Occurrence. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019. 

Kratofil, M.A., G.M. Ylitalo, R.W. Baird, and S.D. Mahaffy. 2019. Breaching the Line: Persistent Organic Pollutant Concentrations Exceeding Thresholds in Endangered Hawaiian False Killer Whales (Pseudorca crassidens). Poster presented at the joint meeting of the American Fisheries Society and The Wildlife Society, Reno, NV, September 29-October 3, 2019.

Gill, K.P., R.W. Baird, and A.M. Gorgone. 2019. Prevalence of Fishery-Related Scarring on the Mouthlines of Common Bottlenose Dolphins Around the Main Hawaiian Islands. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019. 

Mickey, S.T., R.W. Baird, and S.D. Mahaffy. 2019. Bite Me: Using Cookie-Cutter Shark Bite Scars to Estimate Age of Blainville's Beaked Whales in Hawaiian Waters. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019.

Hooper, R., J.C. Brealey, T. van der Valk, A. Alberdi, J.W. Durban, H. Fearnbach, K.M. Robertson, R.W. Baird, M.B. Hanson, P. Wade, M.T.P. Gilbert, P.A. Morin, J.B.W. Wolf, A.D. Foote, and K. Guschanski. 2018. Host-Derived Population Genomics Data Provides Insights into Bacterial and Diatom Composition of the Killer Whale Skin. Molecular Ecology 28(2): 484-502. doi: 10.1111/mec.14860.

Stepanuk, J.E.F., A.J. Read, R.W. Baird, D.L. Webster, and L.H. Thorne. 2018. Spatiotemporal Patterns of Overlap Between Short-Finned Pilot Whales and the U.S. Pelagic Longline Fishery in the Mid-Atlantic Bight: An Assessment to Inform the Management of Fisheries Bycatch. Fisheries Research 208: 309-320. doi: 10.1016/j.fishres.2018.07.008

Bradford, A.L., R.W. Baird, S.D. Mahaffy, A.M. Gorgone, D.J. McSweeney, T. Cullins, D.L. Webster, and A.N. Zerbini. 2018. Abundance Estimates for Management of Endangered False Killer Whales in the Main Hawaiian Islands. Endangered Species Research 36: 297-313. doi: 10.3354/esr00903

Baird, R.W., D.L. Webster, S.M. Jarvis, K.A. Wood, C.J. Cornforth, S.D. Mahaffy, K.K. Martien, K.M. Robertson, D.B. Anderson, and D.J. Moretti. 2018. Odontocete studies on the Pacific Missile Range Facility in August 2017: satellite-tagging, photo-identification, and passive acoustic monitoring. Prepared for Commander, Pacific Fleet, Pearl Harbor, HI. 

Norman, S.A., M.B. Hanson, J. Huggins, D. Lambourn, J. Calambokidis, P. Cottrell, A. Greene, S. Raverty, S. Berta, S. Dubpernell, M. Klope, J.K. Olson, S.J. Jeffries, M. Carrasco, V. Souze, A. Elsby, C. McLean, B. Carlson, C. Emmons, and J.K. Gaydos. 2018. Conception, Fetal Growth, and Calving Seasonality of Harbor Porpoise (Phocoena phocoena) in the Salish Sea Waters of Washington, USA, and Southern British Columbia, Canada. Canadian Journal of Zoology 96(6). doi: 10.1139/cjz-2017-0155

Baird, R.W. 2018. The accessible predator: bloodthirsty murderers no more, captive killer whales helped to transform the species’s reputation. Review of Orca by Jason Colby. Science 360:971. doi: 10.1126/science.att7051

Warlick, A.J., D.A. Duffield, D.M. Lambourn, S.J. Jeffries, J.M. Rice, J.K. Gaydos, J.L. Huggins, J. Calambokidis, L.L. Lahner, J. Olson, E. D'Agnese, V. Souze, A. Elsby, and S.A. Norman. 2018. Spatio-Temporal Characterization of Pinniped Strandings and Human Interaction Cases in the Pacific Northwest, 1991-2016. Aquatic Mammals 44(3). doi: 10.1578/AM.44.3.2018.299 

West, K.L., W.A. Walker, R.W. Baird, D.L. Webster, and G.S. Schorr. 2018. Stomach Contents and Diel Diving Behavior of Melon-Headed Whales (Peponocephala electra) in Hawaiian Waters. Marine Mammal Science 34(4): 1082-1096. doi: 10.1111/mms.12507

Scordino, J.J., G. Merrill, P.J. Gearin, A. Akmajian, J. Calambokidis, and N. Wright. 2017.  Individual Gray Whale Use of Coastal Waters off Northwest Washington During the Feeding Season 1984–2011: Implications for Management. Journal of Cetacean Research and Management 16: 57-69.

Arranz, P., K. J. Benoit-Bird, B.L. Southall, J. Calambokidis, A. S. Friedlaender, and P. L. Tyack. 2018. Risso’s Dolphins Plan Foraging Dives. Journal of Experimental Biology 221(4). doi: 10.1242/jeb.165209

Baird, R.W., D.L. Webster, Z.T. Swaim, H.J. Foley, D.B. Anderson, and A.J. Read. 2018. Spatial use by Cuvier’s beaked whales and short-finned pilot whales satellite tagged off Cape Hatteras, North Carolina: 2017 Annual Progress Report. Prepared for U.S. Fleet Forces Command. Submitted to Naval Facilities Engineering Command Atlantic, Norfolk, Virginia, under Contract No. N62470-15-D-8006, Task Order 50, issued to HDR Inc., Virginia Beach, Virginia. March 2018.

Calambokidis, J. 2016. Study of Seasonal Resident Gray Whales Feeding Strategy in N. Puget Sound, WA, in 2016 Contract Report for Cooperative Agreement CA-16-320. 

Lerma, J.K., L.D. Rhodes, M.B. Hanson, and R.W. Baird. 2019. Assessing Respiratory Microbiome of Small- and Medium-Sized Cetaceans Using Unmanned Aerial Systems: Breath Sampling Humpbacks is so 2016. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019. 

Thorne, L.H., H.J. Foley, R.W. Baird, D.L. Webster, Z.T. Swaim, and A.J. Read. 2017. Movement and Foraging Behavior of Short-Finned Pilot Whales in the Mid-Atlantic Bight: Importance of Bathymetric Features and Implications for Management. Marine Ecology Progress Series 584: 245-257. doi: 10.3354/meps12371

Van Cise, A.M., K.K. Martien, S.D. Mahaffy, R.W. Baird, D.L. Webster, J.H. Fowler, E.M. Oleson, and P.A. Morin. 2017. Familial Social Structure and Socially Driven Genetic Differentiation in Hawaiian Short-Finned Pilot Whales. Molecular Ecology 26(23): 6730-6741. doi: 10.1111/mec.14397

Vanderzee, A., S.D. Mahaffy, D.S. Verbeck, P.C. Johnson, T. Cullins, and R.W. Baird. 2019. Keep an Eye on Me: Using Underwater Photos and Video from Citizen Science to Evaluate Prevalence of Injury in Pygmy Killer Whales in Hawaiʻi. Poster presented at the World Marine Mammal Conference, Barcelona, Spain, December 7-12, 2019. 

Rone, B.K., A.N. Zerbini, A.B. Douglas, D.W. Weller, and P.J. Clapham. 2017. Abundance and Distribution of Cetaceans in the Gulf of Alaska. Marine Biology 164: 23. doi: 10.1007/s00227-016-3052-2

Mowrer, J., J. Calambokidis, N. Musgrove, B. Drager, M.W. Beug, and S.G. Herman. 1977. Polychlorinated Biphenyls in Cottids, Mussels, and Sediment in Southern Puget Sound, Washington. Bulletin of Environmental Contamination and Toxicology 18: 588-594.

Calambokidis, J. 1994. Encounter with a Humpback. In: Life on the Edge: A Guide to California's Endangered Natural Resources. Edited by C.G. Thelander and M. Crabtree. Biosystems Books, Santa Cruz, CA.

Rockwood R.C., J. Calambokidis, and J. Jahncke. 2017. High Mortality of Blue, Humpback and Fin Whales from Modeling of Vessel Collisions on the U. S. West Coast Suggests Population Impacts and Insufficient Protection. PLoS ONE 12(8): e0183052. doi: 10.1371/journal.pone.0183052

Norman, S.A., K.R. Flynn, A.N. Zerbini, F.M.D. Gulland,  M.J. Moore, S. Raverty, D.S. Rotstein,  B.R. Mate, C. Hayslip,  D. Gendron, R. Sears,  A.B. Douglas, and J. Calambokidis. 2017. Assessment of Wound Healing of Tagged Gray (Eschrichtius robustus) and Blue (Balaenoptera musculus) Whales in the Eastern North Pacific Using Long-Term Series of Photographs. Marine Mammal Science 34(1): 27-53. doi: 10.1111/mms.12443

Baird, R.W., D.L. Webster, Z.T. Swaim, H.J. Foley, D.B. Anderson, and A.J. Read. 2017. Spatial Use by Odontocetes Satellite Tagged off Cape Hatteras, North Carolina in 2016. Final Report. Prepared for U.S. Fleet Forces Command. Submitted to Naval Facilities Engineering Command Atlantic, Norfolk, Virginia, under Contract No. N62470-15-D-8006, Task Order 28, issued to HDR Inc., Virginia Beach, Virginia. August 2017.

Vant, M.D., C.M. Gabriele, J.M. Straley, D. Steel, and C.S. Baker. 2003. Maternal fidelity, paternal identity, and gametic exchange in North Pacific humpback whales. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Steiger, G.H., J. Calambokidis, B.L. Troutman, C.E. Bowlby, and D.K. Ellifrit. 2003. Distribution and abundance of humpback whales and other marine mammals off the Washington Olympic coast. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Rasmussen, K., J. Calambokidis, G. Steiger, M. Saborio, and F. Garita. 2003. Comparison of habitat use, migratory destinations, and song between Northern and Southern Hemisphere humpback whale populations on their Central American wintering ground. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Oleson, E., J. Calambokidis, S. Wiggins, and J. Hildebrand. 2003. Blue whale detection rates from acoustic and visual surveys in the southern California Bight. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

London, J., S.J. Jeffries, J.K. Ford, P.F. Olesiuk, J. Calambokidis, and G.R. VanBlaricom. 2003. Ramifications of an extended foraging event by eleven transient killer whales on a population of harbor seals in Hood Canal, Washington, USA. In: Abstracts Fiftennth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Goley, P., J. Calambokidis, R. Jenkinson, M. Niemeyer, A. Mallo, K. Bingham, and S. Deutsch. 2003. Gray whales at the edge: Gray whale use of feeding grounds off northern California and Oregon. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Chandlet, T., and J. Calambokidis. 2003. Sightings and reactions of marine mammals to a single airgun off southern California. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Calambokidis, J., E. Oleson, M. McDonald, W. Burgess, J. Francis, G. Marshall, M. Bakhtiari, and J. Hildebrand. 2003. Feeding and vocal behavior of blue whales determined through simultaneous visual-acoustic monitoring and deployment of suction-cup attached tags. In: Abstracts Fifteenth Biennial Conference on the Biology of Marine Mammals, Greensboro, NC. 14-19 December 2003. Society for Marine Mammalogy, Lawrence, KS.

Ross, P.S., S. Jeffries, M. Ikonomou, J. Calambokidis, and M. Yunker. 2001. PCBs at the Top of the Food Chain: Geographical Variation in British Columbia and Washington Harbor Seals. Proceedings of Puget Sound Research 2001 - The fifth Puget Sound research conference. Puget Sound Action Team, Olympia, WA.

Calambokidis, J., S.J. Jeffries, P.S. Ross, and M. Ikonomou. 2001. Temporal trends in contaminants in Puget Sound harbor seals. Proceedings of Puget Sound Research 2001 - The fifth Puget Sound research conference. Puget Sound Action Team, Olympia, WA.

Oleson, E.M., J.A. Hildebrand, M.A. McDonald, and J. Calambokidis. 2000. Acoustic and visual monitoring for marine mammals at Cortez and Tanner Banks. Presentation to teh 140th meeting of the Acoustical Society of America, Newport Beach, CA, 2 November 2000. Journal of the Acoustical Society of America 108:2540

Costa, D.P., D.E. Crocker, D.M. Waples, P.M. Webb, J. Gedamke, D. Houser, P.D. Goley, B.J. LeBoeuf, and J. Calambokidis. 1998. The California Marine Mammal Research Program of the Acoustic Thermometry of Ocean Climate experiment. Potential effects of low frequency sound on distribution and behavior of marine mammals. ASCE, Reston, VA (USA), vol. 2, 900 pp; 1998; (Taking a Look at California's Ocean Resources: An Agenda for the Future; Magoon, O.R.; Converse, H; Baird, B.;Miller-Henson, M. (eds)) ISBN: 0784402973

Urban, J., K.C. Balcomb, C. Alvarez, P. Bloedel, J. Cubbage, J. Calambokidis, G. Steiger, and A. Aguayo. 1988. Determinacion de los destinos migratorios (Mexico-California Central) de rorcuales jorobados, Megaptera novaeangliae, por medio de fotoidentificacion. Reunion Internacional sobre el estudio de los Mamiferos Marinos, La Paz, B.C.S., Mexico, April 1988 (Abstract).

Mathias, D., A. Thode, J. Straley, J. Calambokidis, G. Schorr, and W.C. Burgess. 2010. Acoustic activity and body motion of tagged sperm whales (Physeter macrocephalus) under natural foraging behavior and depredation conditions. Acoustical Society of America, Baltimore, MD, April 2010.

Huggins, J.L., J. Calambokidis, M.B. Hanson, S.A. Norman, D.M. Lambourn, J.K. Gaydos, D.A. Duffield, K. Wilkinson, S.J. Jeffries, and S. Raverty. 2010. Harbor porpoise stranding trends in Washington state: are higher levels of mortality no longer unusual? Presentation/Proceedings of the 2010 National Marine Animal Health and Stranding Network Conference, 6-9 April 2010, Shepherdstown, WV.

Szaniszlo, W., J. Ford, J. Calambokidis, C. Pasztor, and B. Gisborne. 2011. Humpback and grey whale sightings and distribution in Pacific Rim National Park Reserve, Barkley Sound, British Columbia. Abstract (Proceedings) 19th Biennial Conference on the Biology of Marine Mammals, Tampa, Florida, November 27-December 2, 2011.

Weideman, H.J., Z.M. Joablons, J. Holberg, K.R. Flynn, J. Calambokidis, R.B. Tyson, J.B. Allen, R.S. Wells, K. Hupman, K. Urian, and C.V. Stewart. 2017. Integral Curvature Representation and Matching Algorithms for Identification of Dolphins and Whales. Visual Wildlife Monitoring (VWM 2017), International Conference of Computer Vision ICCV.

Calambokidis, J., and J. Francis. 1994. Injury from PCBs and DDTs to marine mammals in the Southern California Bight. Final report to NOAA-Damage Assessment Division, Washington, D.C.

Laake, J., R.L. DeLong, J. Calambokidis, and S. Osmek. 1997. Abundance and distribution of marine mammals in Washington and British Columbia inside waters, 1996. Pages 67-73 in Marine Mammal Protection Act and Endangered Species Act Implementation Program 1996. AFSC Processed Report 97-10. National Marine Fisheries Service, Seattle, WA.

Osmek, S., J. Calambokidis, J. Laake, P. Gearin, R. DeLong, J. Scordino, S. Jeffries, and R. Brown. 1996. Assessment of the status of harbor porpoise (Phocoena phocoena) in Oregon and Washington waters. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-AFSC-76. 46pp.

Calambokidis, J., K. Rasmussen, and T. Chandler. 1998. Photographic identification of blue and fin whales conducted to test the impacts of the LFA sound source. Final report for Agreement #33318-5819 to Cornell University as part of LFA Phase I from the Office of Naval Research. 14pp.

Calambokidis, J., T. Chandler and S.D. Osmek. 1998. Aerial surveys conducted to test the impacts of the LFA sound source. Final report for Agreement #33318-5819 to Cornell University as part of LFA Phase I from the Office of Naval Research. 31pp.

Calambokidis, J., J.D. Darling, V. Deecke, P. Gearin, M. Gosho, W. Megill, C.M. Tombach, D. Goley, C. Toropova, and B. Gisborne. 2000. Range and movements of seasonal resident gray whales from California to southease Alaska. Final Report to the National Marine Mammal Laboratory, Seattle, WA.

Calambokidis, J., J. Quan, L. Schlender, M. Gosho, P. Gearin, D. Goley, and C. Toropova. 2000. Gray whale photographic identification in 1999: Collaborative reserach by Cascadia Research, the National Marine Laboratory, and Humboldt State University. Final Report to the National Marine Mammal Laboratory, Seattle, WA.

Calambokidis, J., L. Schlender, M. Gosho, and P. Gearin. 2001. Gray whale photographic identification in 2000: Collaborative research by Cascadia Research and the National Marine Laboratory. Final Report to the National Marine Mammal Laboratory, Seattle, WA.

Sears, R., and J. Calambokidis. 2002. Update COSEWIC status report on the blue whale (Balaenoptera musculus) in Canada. In: COSEWIC assessment and update status report on the blue whale (Balaenoptera musculus) in Canada. Committee on the Status of Endangered Wildlife in Canada, Environment Canada, Ottawa, ON. K1A 0H3. 32pp.

Baird, R.W., D.L. Webster, D.J. McSweeney, A.D. Ligon and G.S. Schorr. 2005. Diving behavior and ecology of Cuvier’s (Ziphius cavirostris) and Blainville’s beaked whales (Mesoplodon densirostris) in Hawai‘i. 2005. Report prepared under Order No. AB133F-04-RQ-0928 to Cascadia Research Collective, Olympia, WA from the Southwest Fisheries Science Center, NMFS, La Jolla, CA.

Calambokidis, J., J. Huggins, S. Jeffries, D. Lambourn, and S.A. Raverty. 2006. Strandings of large whales in Washington State and examination of contaminant accumulation. Final report for Prescott Grant NA04NMF4390116 prepared by Cascadia Research for the National Marine Fisheries Service. March 2006.

Chivers, S.J., B. Hanson, J. Laake, P. Gearin, M.M. Muto, J. Calambokidis, D. Duffield, T. McGuire, J. Hodder, D. Greig, E. Wheeler, J. Harvey, K.M. Robertson, and B. Hancock. 2007. Additional genetic evidence for population structure of Phocoena phocoena off the coasts of California, Oregon, and Washington. Southwest Fisheries Science Center Administrative Report LJ-07-08. 16pp.

Calambokidis, J., J. Huggins, S. Jeffries, D. Lambourn, and P. Ross. 2007. Trends, Spatial Distribution, and Health Effects of Contaminants in Washington Harbor Seals from Stranded Animals. Final report for Prescott Grant NA03NMF4390055 prepared by Cascadia Research for the National Marine Fisheries Service. March 2007.

Ford, J.K.B., R.M. Abernathy, A.V. Phillips, J. Calambokidis, G.M. Ellis, and L.M. Nichol. 2010. Distribution and relative abundance of cetaceans in western Canadian waters from ship surveys, 2002-2008. Canadian Technical Report of Fisheries and Aquatic Sciences 2913. 51pp.

Menza, M., J.B. Leirness, T. White, A. Winship, B.P. Kinlan, L. Kracker, J.E. Zamon, L. Ballance, E. Becker, K.A. Forney, J. Barlow, J. Adams, D. Pereksta, S. Pearson, J. Pierce, S.J. Jeffries, J. Calambokidis, A. Douglas, B.C. Hanson, S.R. Benson, and L. Antrim. 2016. Predictive Mapping of Seabirds, Pinnipeds and Cetaceans off the Pacific Coast of Washington. NOAA Technical Memorandum NOS NCCOS 210. Silver Spring, MD. 96pp. doi:10.7289/V5NV9G7Z

Calambokidis, J., and A. Perez. 2017. Association of PCFG gray whales on migration. IWC Report SC/A17/GW/02 for the Workshop on the Status of North Pacific Gray Whales. 27-29 April 2017. La Jolla, CA. 10pp.

Calambokidis, J., and A. Perez. 2017. Sightings and follow-up of mothers and calves in the PCFG and implications for internal recruitment. IWC Report SC/A17/GW/04 for the Workshop on the Status of North Pacific Gray Whales. 27-29 April 2017. La Jolla, CA. 8pp.

Calambokidis, J., J. Laake, and A. Perez. 2017. Updated analysis of abundance and population structure of seasonal gray whales in the Pacific Northwest, 1996-2015. IWC Report SC/A17/GW/05 for the Workshop on the Status of North Pacific Gray Whales. 27-29 April 2017. La Jolla, CA. 69pp.

Rasmussen, K., D.M. Palacios, J. Calambokidis, and G.H. Steiger. 2017. Sighting and environmental characteristics of humpback whale breeding habitat off Pacific Central America: comparison of Northern and Southern Hemisphere populations. IWC Report SC/A17/NP/07 for the Workshop on the Comprehensive Assessment of North Pacific Humpback Whales. 18-21 April 2017. Seattle, WA. 17pp.

Calambokidis, J., and J. Barlow. 2017. Trends in the Abundance of Humpback Whales in the North Pacific Ocean from 1980 to 2006. IWC Report SC/A17/NP/10 for the Workshop on the Comprehensive Assessment of North Pacific Humpback Whales. 18-21 April 2017. Seattle, WA. 16pp.

Calambokidis, J.  J. Barlow, K. Flynn, E. Dobson, and G.H. Steiger. 2017. Update on abundance, trends, and migrations of humpback whales along the US West Coast. IWC Report SC/A17/NP/13 for the Workshop on the Comprehensive Assessment of North Pacific Humpback Whales. 18-21 April 2017. Seattle, WA. 18pp.

Baird, R.W. 2017. Using satellite tags to study spotted dolphin movements in Hawai‘i. Hawaii Fishing News 42(3):22-23.

Holt, M.M., M.B. Hanson, D.A. Giles, C.K. Emmons, and J.T. Hogan. 2017. Noise Levels Received by Endangered Killer Whales Orcinus orca Before and After Implementation of Vessel Regulations. Endangered Species Research 34: 15-26. doi: 10.3354/esr00841

Weideman, H.J, Z.M. Jablons, J. Holmberg, K. Flynn, J. Calambokidis, R.B. Tyson, J.B. Allen, R.S. Wells, K. Hupman, K. Urian, and C.V. Stewart. 2017. Integral Curvature Representation and Matching Algorithms for Identification of Dolphins and Whales. Proceedings of the IEEE International Conference on Computer Vision (ICCV) 2017: 2831-2839.

Goldbogen, J.A., D.E. Cade, A.T. Boersma, J. Calambokidis, S.R. Kahane‐Rapport, P.S. Segre, A.K. Stimpert, and A.S. Friedlaender. 2017. Using Digital Tags with Integrated Video and Inertial Sensors to Study Moving Morphology and Associated Function in Large Aquatic Vertebrates. The Anatomical Record 300(11): 1935-1941. doi: 10.1002/ar.23650

Friedlaender, A.S., J.E. Herbert-Read, E.L. Hazen, D.E. Cade, J. Calambokidis, B.L. Southall, A.K. Stimpert, and J.A. Goldbogen. 2017. Context-Dependent Lateralized Feeding Strategies in Blue Whales. Current Biology 27: R1206-R1208. doi: 10.1016/j.cub.2017.10.023

Fossette, S., B. Abrahms, E.L. Hazen, S.J. Bograd, K.M. Newton, J. Calambokidis, J.A. Burrows, J. Goldbogen, J.T. Harvey, B. Marinovic, B. Tershy, and D. Croll. 2017. Resource Partitioning Facilitates Coexistence in Sympatric Cetaceans in the California Current. Ecology and Evolution 7(21): 9085-9097. doi: 10.1002/ece3.3409

Norman S.A., Z. Winfield, B.H. Rickman, S. Usenko, M. Klope, S. Berta, S. Dubpernell, H. Garrett, M.J. Adams, D. Lambourn, J. Huggins, N. Lysiak, A. Clark, R. Sanders, and S.J. Trumble. 2017. Persistent Organic Pollutants, Stress and Sex Hormones in Harbor Porpoise (Phocoena phocoena) with B-cell Lymphoma. Archives of Environmental Contamination and Toxicology 72: 596-605. doi: 10.1007/s00244-017-0404-y

Cade, D.E., K.R. Barr, J. Calambokidis, A.S. Friedlaender, and  J.A. Goldbogen, 2017. Determining Forward Speed from Accelerometer Jiggle in Aquatic Environments. Journal of Experimental Biology 221(2): jeb170449. doi: 10.1242/jeb.170449

West,  K.L., W.A. Walker, R.W. Baird, J.G. Mead, and P.W. Collins. 2017. Diet of Cuvier’s Beaked Whales Ziphius cavirostris from the North Pacific and a Comparison with Their Diet World-Wide. Marine Ecology Progress Series 574: 227-242. doi: 10.3354/meps12214

Martien, K.K., B.L. Hancock-Hanser, R.W. Baird, J.J. Kiszka, J.M. Aschettino, M. Oremus, and M.C. Hill. 2017. Unexpected Patterns of Global Population Structure in Melon-Headed Whales (Peponocephala electra). Marine Ecology Progress Series 577: 205-220. doi: 10.3354/meps12203

Baird, R.W., S.W. Martin, R. Manzano-Roth, D.L. Webster, and B.L. Southall. 2017. Assessing exposure and response of three species of odontocetes to mid-frequency active sonar during submarine commanders courses at the Pacific Missile Range Facility: August 2013 through February 2015. Prepared for U.S. Pacific Fleet, submitted to NAVFAC PAC by HDR Environmental, Operations and Construction, Inc., Honolulu, Hawai‘i.

Baird, R.W. 2018. Cuvier's Beaked Whales. In: Encyclopedia of Marine Mammals (3rd edition). Edited by B. Würsig, J.G.M. Thewissen, K. Kovacs. Elsevier Inc.

Baird, R.W. 2018. Pygmy Killer Whales. In: Encyclopedia of Marine Mammals (3rd edition). Edited by B. Würsig, J.G.M. Thewissen, K. Kovacs. Elsevier Inc.

Baird, R.W. 2018. False Killer Whales. In: Encyclopedia of Marine Mammals (3rd edition). Edited by B. Würsig, J.G.M. Thewissen, K. Kovacs. Elsevier Inc. 

Baird, R.W., D.L. Webster, R. Morrissey, B.K. Rone, S.D. Mahaffy, A.M. Gorgone, D.B. Anderson, E.E. Henderson, S.W. Martin, and D.J. Moretti. 2017. Odontocete studies on the Pacific Missile Range Facility in February 2016: satellite-tagging, photo-identification, and passive acoustic monitoring. Prepared for Commander, Pacific Fleet, Honolulu, HI.

Busquets-Vass G., S.D. Newsome, J. Calambokidis, G. Serra-Valente, J.K. Jacobsen, S. Aguíñiga-García, and D. Gendron. 2017. Estimating Blue Whale Skin Isotopic Incorporation Rates and Baleen Growth Rates: Implications for Assessing Diet and Movement Patterns in Mysticetes. PLoS ONE 12(5): e0177880. doi: 10.1371/journal.pone.0177880

Kvadsheim, P.H., S. DeRuiter, L.D. Sivle, J. Goldbogen, R. Roland-Hansen, P.J. Miller, F.P.A Lam, J. Calambokidis, A. Friedlaender, F. Visser, and P.L. Tyack. 2017. Avoidance Responses of Minke Whales to 1–4kHz Naval Sonar. Marine Pollution Bulletin 121(1-2): 60-68. doi: 10.1016/j.marpolbul.2017.05.037

Becker, E.A., K.A. Forney, B.J. Thayre, A.J. Debich, G.S. Campbell, K. Whitaker, A.B. Douglas, A. Gilles, R. Hoopes, and J.A. Hildebrand. 2017. Habitat-Based Density Models for Three Cetacean Species off Southern California Illustrate Pronounced Seasonal Differences. Frontiers in Marine Science 4: 121. doi: 10.3389/fmars.2017.00121 

Forney, K.A., B.L. Southall, E. Slooten, S. Dawson, A.J. Read, R.W. Baird, and R.L. Brownell Jr. 2017. Nowhere to Go: Noise Impact Assessments for Marine Mammal Populations with High Site Fidelity. Endangered Species Research 32: 391-413. doi: 10.3354/esr00820

Baird, R. W., D. L. Webster, S.D. Mahaffy,  A.M. Gorgone, E. M. Walters, and D.B. Anderson. 2017. Studies of dolphins and whales on and around the Pacific Missile Range Facility using photo-identification and satellite tagging: evidence for resident and non-resident species. Prepared under Contract No. N66604-14-C0145 from the Naval Undersea Warfare Center. 

DeRuiter, S.L., R. Langrock, T. Skirbutas, J.A. Goldbogen, J. Calambokidis, A.S. Friedlaender, and  B.L. Southall. 2017. A Multivariate Mixed Hidden Markov Model for Blue Whale Behaviour and Responses to Sound Exposure. Annals of Applied Statistics 11(1): 362-392. doi: 10.1214/16-AOAS1008

Dinis, A., R.W. Baird, S.D. Mahaffy, V. Martín, and F. Alves. 2017. Beaked Whales with Rostrum Deformities: Implications for Survival and Reproduction. Marine Mammal Science 33(3): 946-954. doi: 10.1111/mms.12406

Baird, R.W., S.D. Mahaffy, A.M. Gorgone, K.A. Beach, T. Cullins, D.J. McSweeney, D.S. Verbeck and D.L. Webster. 2017. Updated evidence of interactions between false killer whales and fisheries around the main Hawaiian Islands: assessment of mouthline and dorsal fin injuries. Document PSRG-2017-16 submitted to the Pacific Scientific Review Group.

Van Cise, A.M., R.W. Baird, T.A. Mooney, and J. Barlow. 2017. Acoustic Differentiation of Shiho- and Naisa-Type Short-Finned Pilot Whales in the Pacific Ocean. The Journal of the Acoustical Society of America 141(737). doi: 10.1121/1.4974858

Palmer C., R.W. Baird, D.L. Webster, A.C. Edwards, R. Patterson, A. Withers, E. Withers, R. Groom, and J.C.Z. Woinarski. 2017. A Preliminary Study of the Movement Patterns of False Killer Whales (Pseudorca crassidens) in Coastal and Pelagic Waters of the Northern Territory, Australia. Marine and Freshwater Research 68(9): 1726-1733. doi: 10.1071/MF16296

Goldbogen, J.A., D. Cade, J. Calambokidis, A.S. Friedlandaender, J. Potvin, P.S. Segre, and A.J. Werth. 2017. How Baleen Whales Feed: The Biomechanics of Engulfment and Filtration. Annual Review of Marine Science 9: 367-386. doi: 10.1146/annurev-marine-122414-033905

Baird, R.W., D.L. Webster, Z. Swaim, H.J. Foley, D.B. Anderson, and A.J. Read. 2016. Spatial Use by Odontocetes Satellite Tagged off Cape Hatteras, North Carolina in 2015. Final report. Prepared for U.S. Fleet Forces Command. Submitted to Naval Facilities Engineering Command Atlantic, Norfolk, Virginia, under Contract No. N62470-10-3011, Task Order 57 and N62470-15- 8006, Task Order 07, issued to HDR Inc., Virginia Beach, Virginia. 29 July 2016.

Calambokidis, J. 2016. Update on the status of humpback and blue whales along the US West Coast including the Gulf of the Farallones. Presentation at Beyond the Golden Gate Research Symposium, Tiburon, CA on 1 December 2016. Proceedings 

Calambokidis, J. 2016. Review of the Status of Humpback Whales in the North Pacific and Recent Changes in Distribution and Entanglements. Presentation at the 15^th International Conference of the American Cetacean Society, Monterey, CA 11-13 November 2016.

Calambokidis, J. 2016. New tags provide information useful for conservation and relate with anthropogenic stranding
factors such as ship strikes and entanglements. Invited presentation at the 2016 National Marine Animal Health and Stranding Network Conference, Shepherdstown, WV 6-9 September 2016.

Calambokidis, J, A Szesciorka, and J Fahlbusch. 2016. Insights into blue and humpback whale movements and diving behavior from archival tag deployments in relation to ship-strike risk in the Gulf of the Farallones. Presentation at Beyond the Golden Gate Research Symposium, Tiburon, CA on 1 December 2016.

Calambokidis, J and J Huggins. 2016. Biological indicators for the increase in West Coast humpback whale entanglements: Insights based on trends in abundance and shifts in feeding behavior.  Presentation at the 2016 National Marine Animal Health and Stranding Network Conference, Shepherdstown, WV 6-9 September 2016.

Busquets-Vass, GR, S Newsome, J Calambokidis, S Aguiñiga-García, G Serra-Valente, J Jacobsen, D Gendron. 2015. Foraging ecology and movement patterns of blue whales in the eastern Pacific Ocean inferred by stable isotopes. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Anderson, D, J Evenson, B Murphie, T Cyra, J Calambokidis. 2015. Return of harbor porpoise to Washington State's Puget Sound as documented through 20 years of aerial seabird surveys. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Pease, VL, A Perez, M Lauf, A Lang, J Calambokidis. 2015. The road less taken: Why do a small number of gray whales demonstrate inter-annual fidelity to springtime feeding areas in northern Puget Sound?. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Dobson, E, J Calambokidis, A Kaulfuss, J de Weerdt, V Pouey-Santalou, A Chavez, K Audley. 2015. Migratory destinations of North Pacific humpback whales from Guerrero state in Southwest Mexico reveal extension of Central American breeding grounds. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Perez, AB, B Gisborne, D Goley, J Jacobsen, W Szaniszlo, A Lang, J Calambokidis. 2015. Insights into recruitment in the Pacific Coast Feeding Group of gray whales based on resightings of mothers and their calves. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Steiger, GH, J Calambokidis, M Malleson, AB Douglas, E Falcone, SJ Jeffries, B Gisborne, JK Ford. 2015. Changes in humpback whale occurence in the Washington-southern British Columbia feeding area. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Holmberg, J., T. Cheeseman, J. Van Oast, K. Southerland, E. Falcone, J. Calambokidis. 2015. Wildbook: An Open Source Framework for Cetacean Mark-Recapture. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18 2015.

Shadwick, R.E., J.A. Goldbogen, J. Potvin, N.D. Pyenson, and A.W. Vogl. 2013. Novel Muscle and Connective Tissue Design Enables Hyper-Extensibility and Controls Engulfment Volume in Lunge-Feeding Rorqual Whales. Journal of Experimental Biology 216(14): 2691-2701. doi: 10.1242/jeb.081752

Stimpert, A, S DeRuiter, E Falcone, J Joseph, A Douglas, D Moretti, A Friedlaender, J Calambokidis, G Gailey, P Tyack, B Southall, and J Goldbogen. 2015. Tagged fin whale call production, associated behavior, and response to anthropogenic sound in the Southern California Bight. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Goldbogen, J, D Cade, J Calambokidis, A Stimpert, M Jensen, J Potvin, and A Friedlaender. 2015. Insights into the underwater behavior, species interactions, and biomechanics of baleen whales using integrated video and inertial sensors. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Cade, D, J Calambokidis, A Friedlaender, and J Goldbogen. 2015. Expansion rates of ventral groove blubber in lunge-feeding blue whales. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Fleming, A, C Clark, J Calambokidis, and J Barlow. 2015. Flexible foragers: Humpback whale diets in the California Current indicate variance in ocean climate and ecosystem conditions. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Huggins, J, J Calambokidis, D Lambourn, S Norman, J Evenson, D Anderson, B Hanson, S Jeffries, and S Berta. 2015. Utility of sighting and stranding data to document marine mammal occurrence: A case study in Puget Sound, Washington, USA. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Szesciorka, A, J Calambokidis, J Goldbogen, and J Harvey. 2015. Humpback whale behavioral response to ships in and around major shipping lanes off San Francisco, CA. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Southall, B, S DeRuiter, A Friedlaender, E Hazen, J Goldbogen, A Stimpert, R Langrock, C Harris, L Thomas, G Schorr, A Allen, G Gailey, E Falcone, D Moretti, and J Calambokidis. 2015. Complementary analyses of behavioral responses to sonar in blue whales (Balaenoptera musculus). Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Douglas, A, R Sears, J Denkinger, E Dobson, P Olson, T  Gerrodette, and J Calambokidis. 2015. Movement of a blue whale (Balaenoptera musculus) between the Costa Rica Dome and the Galapagos: Management implications of the first documented cross-equatorial movement. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

DeRuiter, S, S Isojunno, I Noirot, A Stimpert, W Zimmer, M Leung, C Harris, L Thomas, B Southall, J Calambokidis, P Tyack, and P Miller. 2015. Sperm whale foraging behavior changes in response to anthropogenic sound. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Allen, A, J Goldbogen, A Friedlaender, J Calambokidis, and B Southall. 2015. An automated lunge detector for baleen whale tag data: Application and results for fin whales off Southern California. Abstract (Proceedings) 21st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Flynn, KR and Calambokidis, J. 2015. Large ships as an observation platform for whale sightings and for informing dynamic management areas: a successful test case from the US West Coast. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Norman, S, J Calambokidis, K Flynn, B  Mate, C Hayslip, F Gulland, M Moore, S  Raverty, D Rostein, A Zerbini, A Douglas, D Gendron, and R Sears. 2015. Quantitative assessment of wound healing based on long-term follow up of tagged gray and blue whales. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Calambokidis, J, A Zerbini, K Flynn, A Douglas, S Norman, B Mate, C Hayslip, D Gendron, R Sears, J Jacobsen, and D Goley. 2015. Quantitative examination of long-term impact of implant tagging on survival of gray and blue whales. Abstract (Proceedings) 21^st Biennial Conference on the Biology of Marine Mammals, San Francisco, California, December 14-18, 2015.

Calambokidis, J.,  J. Laake, and A Perez. 2014. Updated analysis of abundance and population structure of seasonal gray whales in the Pacific Northwest, 1996-2012. Final Report to NOAA, Seattle, WA. 75 pp.

Stepanuk, J., A. Read, R. Baird, D. Webster, L. Thorne. 2017. Spatial overlap of short-finned pilot whales and pelagic longlines in the Mid-Atlantic Bight of the United States: Towards a spatiotemporal approach to reducing bycatch. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Foley, H., D. Anderson, R. Baird, Z. Swaim, D. Waples, D. Webster, J. Bell, A. Read. 2017. Short-finned pilot whales exhibit two modes of foraging behavior along the East Coast of the United States. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Thorne, L., R. Baird, D. Webster, J. Stepanuk, A. Read. 2017. A predictive model and field test of interactions between short-finned pilot whales and a pelagic longline fishery. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Shearer, J., R. Baird, D. Webster, H. Foley, Z. Swaim, J. Bell, A. Read. 2017. Diving behavior of Cuvier's beaked whales (Ziphius cavirostris) off Cape Hatteras, North Carolina. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Rockwood, R. C., J. Calambokidis, J. Jahncke. 2017. High mortality of blue, humpback and fin whales from vessel collisions on the U.S. West Coast suggests population impacts and insufficient protection. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Friedlaender, A., E. Hazen, D. Cade, J. Calambokidis, B. Southall, A. Stimpert, J. Goldbogen. 2017. Turning left to stay right: A unique test of lateralization across the full range of three-dimensional foraging maneuvers in blue whales (Balaenoptera musculus). Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Goldbogen, J., D. Cade, J. Calambokidis, A. Stimpert, B. Flammang, A. Friedlaender, J. Potvin. 2017. Living in a whale’s boundary layer: Swimming hydrodynamics of large vertebrates generate a low-drag ecological niche for commensal marine organisms. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Quintana, E., J. Calambokidis. 2017.  Resighting patterns and behavior of humpback whales sighted in a tropical breeding ground off Guatemala. 

Lang, A., B. Hancock-Hanser, P. Morin, F. Archer, J. Calambokidis, J. P. Torres-Florez, H. Rosenbaum, R. Brownell, B. Taylor. 2017. Answers or more questions? Using high-throughput sequencing approaches to address the subspecies taxonomy of blue whales. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Garcia Chavez, A., T. Hanks, J. Calambokidis, E. Dobson, K. Audley. 2017. Marine mammal monitoring in the Southwest Pacific State of Guerrero, Mexico. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Cheeseman, Ted. J. Calambokidis, P. Clapham, F. Sharpe, T. Johnson, K. Flynn, K. Southerland, N. Muldavin. 2017. A new web-based platform for ongoing large-scale photo ID linkage study of North Pacific humpback whales. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Melica, V., A. Kameroff-Steeves, J. Calambokidis, D. Gendron. 2017. Reproductive endocrine profiles in blue whales from the Eastern North Pacific Ocean. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Southall, B., J. Calambokidis, S. DeRuiter, A. Allen, E. Hazen, A. Stimpert, D. Cade, A. Szesciorka, A. Friedlaender, J. Goldbogen, D. Moretti, G. Gailey. 2017. Controlled exposure experiments with full-scale military mid-frequency sonars in four cetacean species. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Zerbini, A., J. Robbins, R. Andrews, V. Andrews-Gof, M. Baumgartner, P. Clapham, M. Double, A. Kennedy, A. Leask, G. Schorr, S. Wilton. 2017. Development of robust large whale satellite tags improves tag performance and reduces animal welfare problems. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Schorr, G., E. Falcone, S. Watwood, S. DeRuiter, A. Zerbini, R. Andrews, R. Morrissey, E. McCarthy, D. Moretti. 2017. Factors associated with unusually strong responses to mid-frequency active sonar in Cuvier’s beaked whales. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Fahlbusch, J., D. Cade, J. Goldbogen, A. Friedlaender, A. Stimpert, J. Calambokdis. 2017. Intra and inter-species interactions among humpback whales in Monterey Bay: Competition and not just cooperation. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Shuster, L., J. Huggins, D. Anderson, A. Douglas, J. Calambokidis. 2017. Common dolphins in Washington State waters: An increase in sightings and strandings. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Steiger, G., J Calambokidis, P. Wade, K. Audley, C. S. Baker. 2017. Migratory destinations of humpback whales that feed along the US West Coast: Implications for management under the newly recognized Distinct Population Segments. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Pasi, C., J. Calambokidis, J. Huggins. Health status of stranded gray whales (Eschrictius robustus) in Washington State using multiple indicators. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Harrison, N., J. Calambokidis. 2017. Google Earth satellite images provide novel method for examining feeding areas of gray whales in Puget Sound, Washington. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Szesciorka, A., A. Sirovic, L. Lewis, J. Fahlbusch, N. Harrison, B. Southall, J. Calambokidis. 2017. Medium-duration archival tags provide unique insights into baleen whale behavior. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Flynn, K., J. Calambokidis, H. Weideman, J. Crall, Z. Jablons, C. Stewart, C. Kingen, J. Van Oast, J. Holmberg. 2017. Testing of two new automated fluke identification algorithms and comparison to non-automated methods for humpback whales. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Calambokidis, J., D. Cade, J. Fahlbusch, A. Szesciorka, A. Allen, J. Goldbogen. 2017. A high risk intertidal feeding strategy for gray whales examined with new suction-cup attached multi-sensor video tags. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Walker-Milne, N., Y. Papastamatiou, R. Baird, S. Mahaffy. 2017. Seasonal prevalence of cookiecutter shark (Isistius brasiliensis) bites on short-finned pilot whales (Globicephala macrorhynchus) in Hawai‘i. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Van Cise, A., P. Morin, K. Martien, R. Baird, S. Mahaffy, D. Webster, A. Mooney, E. Oleson, J. Barlow. 2017. Song of my people: Short-finned pilot whales in Hawai'i use vocal repertoire diversity to maintain social and genetic population structure. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Bradford, A., R. Baird, S. Mahaffy, A. Gorgone, D. McSweeney, T. Cullins, D. Webster, A. Zerbini. 2017. Abundance estimates for management of endangered false killer whales in the main Hawaiian Islands. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Albertson, R., A. Alexander, K. Martien, R.W. Baird, M. Oremus, S. Caballero-Gaitan, M. Poole, R. Brownell, D. Duffield, C. S. Baker. 2017. Worldwide Phylogeography of the Rough-Toothed Dolphin (Steno bredanensis) Described Using Mitogenomes and Nuclear Introns. Abstract of the 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

West, K., W. Walker, R. Baird, J. Mead, P. Collins. 2017. Diet of Cuvier’s beaked whales (Ziphius cavirostris) in the North Pacific and a comparison with their diet world-wide. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Yahn, S., R. Baird, S. Mahaffy, D. Webster. 2017. How to tell them apart? Blackfish species discrimination using fin and body morphometrics obtainable from photos at sea. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Walters, E., R. Baird, D. Webster, D. Anderson, S. Mahaffy, G. Schorr, R. Andrews. 2017. Defining key habitats: An analysis of short-finned pilot whale communities in Hawai‘i using satellite tag data. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Mahaffy, S., R. Baird, A. Gorgone, T. Cullins, D. McSweeney, D. Webster. 2017. Group dynamics of the endangered insular population of false killer whales in Hawai‘i. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Baird, R., D. Anderson, D. Webster. 2017. Bringing the right fishermen to the table: An index of overlap between false killer whales and nearshore fisheries in Hawai‘i, with implications for targeting observer programs and outreach efforts. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Anderson, D., R. Baird, A. Bradford, D. Webster. 2017. Longline fishery interactions and resource selection of satellite-tagged pelagic false killer whales in the North Pacific. Abstract (Proceedings) 22nd Biennial on the Biology of Marine Mammals, Halifax, Nova Scotia, October 22-27, 2017.

Evenson, J.R., D. Anderson, B.L. Murphie, T.A. Cyra, and J. Calambokidis. 2016. Disappearance and return of harbor porpoise to Puget Sound: 20 year pattern revealed from winter aerial surveys. Technical Report. Washington Department of Fish and Wildlife, Wildlife Program and Cascadia Research Collective, Olympia, WA.

Barbosa, L., C.K. Johnson, D.M. Lambourn, A.K. Gibson, K.H. Haman, J.L. Huggins, A.R. Sweeney, N. Sundar, S.A. Raverty, and M.E. Grigg. 2015. A Novel Sarcocystis neurona Genotype XIII is Associated with Severe Encephalitis in an Unexpectedly Broad Range of Marine Mammals from the Northeastern Pacific Ocean. International Journal for Parasitology 45(9-10): 595 - 603. doi: 10.1016/j.ijpara.2015.02.013

Tyack, P.L., J. Calambokidis, A. Friedlaender, J. Goldbogen, and B. Southall. 2014. Formal Comment on Schorr, G.S., E.A. Falcone, D.J. Moretti, and R.D. Andrews. 2014. First Long-Term Behavioral Records from Cuvier’s Beaked Whales (Ziphius cavirostris) Reveal Record-Breaking Dives. PLoS ONE 9(3): e92633. doi: 10.1371/journal.pone.0092633. PLoS ONE 10(12): e0142287. doi: 10.1371/journal.pone.0142287

Silva, T.L., T.A. Mooney, L.S. Sayigh, P.L. Tyack, R.W. Baird, and J.N. Oswald. 2016. Whistle Characteristics and Daytime Dive Behavior in Pantropical Spotted Dolphins (Stenella attenuata) in Hawai‘i Measured Using Digitial Acoustic Recording Tags (DTAGs). Journal of the Acoustical Society of America 140(421). doi: 10.1121/1.4955081

Ford, M.J., J. Hempelmann, M.B. Hanson, K.L. Ayres, R.W. Baird, C.K. Emmons, J.I. Lundin, G.S. Schorr, S.K. Wasser, and L.K. Park. 2016. Estimation of a Killer Whale (Orcinus orca) Population's Diet Using Sequencing Analysis of DNA from Feces. PLOS ONE 11(1): e0144956. doi: 10.1371/journal.pone.0144956 

Cade, D.E, A.S. Friedlaender, J. Calambokidis, and J.A. Goldbogen. 2016. Kinematic Diversity in Rorqual Feeding Mechanisms. Current Biology 26(19): 2617-2624. doi: 10.1016/j.cub.2016.07.037

Baird, R.W. 2016. The lives of Hawai‘i's dolphins and whales: natural history and conservation. University of Hawai‘i Press, Honolulu, Hawai‘i.

Reggente, M.A.L., F. Alves, C. Nicolau, L. Freitas, D. Cagnazzi, R.W. Baird, and P. Galli, P. 2016. Nurturant Behavior Toward Dead Conspecifics in Free-Ranging Mammals: New Records for Odontocetes and a General Review. Journal of Mammalogy 97(5): 1428-1434. doi: 10.1093/jmammal/gyw089

Baird, R.W., D.L. Webster, R. Morrissey, B.K. Rone, S.D. Mahaffy, A.M. Gorgone, D.B. Anderson and D.J. Moretti. 2017. Odontocete studies on the Pacific Missile Range Facility in February 2016: satellite-tagging, photo-identification, and passive acoustic monitoring. Prepared for Commander, Pacific Fleet, Environmental Readiness Division, Pearl Harbor, HI. Submitted to Naval Facilities Engineering Command (NAVFAC) Pacific, EV2 Environmental Planning, Pearl Harbor, HI under Contract No. N62470-15-D-8006 TO KB08 issued to HDR Inc., Honolulu, HI..

Baird, R.W., D.L. Webster, Z. Swaim, H.J. Foley, D.B. Anderson, and A.J. Read. 2016. Spatial Use by Odontocetes Satellite Tagged off Cape Hatteras, North Carolina in 2015. Final report. Prepared for U.S. Fleet Forces Command. Submitted to Naval Facilities Engineering Command Atlantic, Norfolk, Virginia, under Contract No. N62470-10-3011, Task Order 57 and N62470-15- 8006, Task Order 07, issued to HDR Inc., Virginia Beach, Virginia. 29 July 2016.

Albertson, R.G., R.W. Baird, M. Oremus, M.M. Poole, K.K. Martien, and C.S. Baker. 2016. Staying Close to Home? Genetic Differentiation of Rough-Toothed Dolphins Near Oceanic Islands in the Central Pacific Ocean. Conservation Genetics 18: 33-51. doi: 10.1007/s10592-016-0880-z

Szesciorka, A.R., J. Calambokidis, and J.T. Harvey. 2016. Testing Tag Attachments to Increase the Attachment Duration of Archival Tags on Baleen Whales. Animal Biotelemetry 4: 18. doi: 10.1186/s40317-016-0110-y

Segre, P.S., D.E. Cade, F.E. Fish, J. Potvin, A.N. Allen, J. Calambokidis, A.S. Friedlaender, and J.A. Goldbogen. 2016. Hydrodynamic Properties of Fin Whale Flippers Predict Maximum Rolling Performance. Journal of Experimental Biology 219(21): 3315-3320. doi: 10.1242/jeb.137091 

Clark C.T., A.H. Fleming, J. Calambokidis, N.M. Kellar, C.D. Allen, K.N. Catelani, M. Robbins, N.E. Beaulieu, D. Steel, and J.T. Harvey. 2016. Heavy with Child? Pregnancy Status and Stable Isotope Ratios as Determined from Biopsies of Humpback Whales. Conservation Physiology 4(1): cow050. doi: 10.1093/conphys/cow050.

Allen, A.N., J.A. Goldbogen, A.S. Friedlaender, and J. Calambokidis. 2016. Development of an Automated Method of Detecting Stereotyped Feeding Events in Multisensor Data from Tagged Rorqual Whales. Ecology and Evolution 6(20): 7522–7535. doi: 10.1002/ece3.2386

Friedlaender, A.S., E.L. Hazen, J.A. Goldbogen, A.K. Stimpert, J. Calambokidis, and B.L. Southall. 2016. Prey-Mediated Behavioral Responses of Feeding Blue Whales in Controlled Sound Exposure Experiments. Ecological Applications 26(4): 1075-1085. doi: 10.1002/15-0783

Arranz, P., S.L. DeRuiter, A.K. Stimpert, S. Neves, A.S. Friedlaender, J.A. Goldbogen, F. Visser, J. Calambokidis, B.L. Southall, and P.L. Tyack. 2016. Discrimination of Fast Click-Series Produced by Tagged Risso’s Dolphins (Grampus griseus) for Echolocation or Communication. Journal of Experimental Biology 219(18): 2898-2907. doi: 10.1242/jeb.144295

Kendall-Bar, J.M., D.W. Weller, H. Fearnbach, S. Shane, G.S. Schorr, E.A. Falcone, J. Calambokidis, A. Schulman-Janiger, and J. Barlow. 2016. Movement and Occurrence Patterns of Short-Finned Pilot Whales (Globicephala macrorhynchus) in the Eastern North Pacific. Aquatic Mammals 42(3): 300-305. doi: 10.1578/AM.42.3.2016.300

Calambokidis, J. and T Chandler. 2000. Marine mammal observations and mitigation associated with USGS seismic surveys in the southern California Bight in 2000. Report to U.S. Geological Survey, Menlo Park, CA. Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501. 13pp

Calambokidis, J. and L. Kretchmar. 1977. Observations of a suburban population of harbor seals in Eld Inlet, Puget Sound. Annual Meeting of the Pacific Northwest Bird and Mammal Society, 16 April 1977, Olympia, Wa.

Calambokidis, J. 1978. PCB and DDE in harbor seals and fish from Washington State waters. Proceedings of the 33rd Northwest Regional Meeting of the American Chemical Society, 14-16 June 1978, Seattle, Wa.

Calambokidis, J. S. Carter, and J. Cubbage. 1979. Harbor seal haul out habitat and differences in haul out pattern in the inland waters of Washington State. Abstracts of the Third Biennial Conference on the Biology of Marine Mammals, 7-11 October 1979, Seattle, Wa.

Calambokidis, J., S. Carter, and J. Cubbage. 1979. Variations in the pupping season of harbor seals in Puget Sound and Hood Canal, Washington. Abstracts of the Third Biennial Conference on the Biology of Marine Mammals, 7-11 October 1979, Seattle, Wa.

Calambokidis, J. S. Carter, and J. Cubbage. 1979. The concentration and dynamics of chlorinated hydrocarbon contaminants in harbor seals and their use in gaining biological information. Abstracts of the Third Biennial Conference on the Biology of Marine Mammals, 7-11 October 1979, Seattle, Wa.

Cubbage, J., J. Calambokidis, and S. Carter. 1979. Fish otoliths recovered from scat of harbor seals in the inland waters of Washington State. Abstracts of the Third Biennial Conference on the Biology of Marine Mammals, 7-11 October 1979, Seattle, Wa.

Calambokidis, J. and R.L. Gentry. 1981. Growth, behavior, and impact of tagging on newborn northern fur seals, Callorhinus ursinus. Abstracts of the Fourth Biennual Conference on the Biology of Marine Mammals. 14-18 Dec. 1981, San Francisco, Ca.

Calambokidis, J., G.H. Steiger, and R.A. Butler. 1983. Biology and behavior of molting Canada geese (Branta canadensis fulva) in Glacier Bay, Alaska. Abstracts of the First Glacier Bay Science Symposium, 23- 26 September 1983. Gustavus, Ak.

Calambokidis, J., G.H. Steiger, and L.E. Healey. 1983. Harbor seal (Phoca vitulina) population, behavior, and reaction to vessels in Glacier Bay, Alaska. Abstracts of the First Glacier Bay Science Symposium, 23- 26 September 1983. Gustavus, Ak.

Calambokidis, J., G.H. Steiger, and L.E. Healey. 1983. Behavior of harbor seals and their reaction to vessels in Glacier Bay, Alaska. Abstracts of the Fifth Biennial Conference on the Biology of Marine Mammals. 27 Nov-1 Dec. 1983, Boston, Mass.

Calambokidis, J. 1985. Status of Puget Sound harbor seals and the evidence for contaminant effects on marine mammals. Presentation to Washington Chapter of the Wildlife Society, 22 June 1985, Seattle, Wa.

Steiger, G.H., J. Calambokidis, J.C. Cubbage, D.C. Gribble, D.E. Skilling, and A.W. Smith. 1985. Comparative mortality, pathology, and microbiology of harbor seal neonates at different sites in Puget Sound, Washington. Abstracts of the Sixth Biennial Conference on the Biology of Marine Mammals. 22-26 Nov. 1985, Vancouver, B.C.

Cubbage, J.C., J. Calambokidis, and G.H. Steiger. 1985. Photogrammetry techniques applied to marine mammals. Abstracts of the Sixth Biennial Conference on the Biology of Marine Mammals. 22-26 Nov. 1985, Vancouver, B.C.

Calambokidis, J., G.H. Steiger, and J.C. Cubbage. 1985. Biology of Puget Sound marine mammals: Evidence of pollution-related problems. Abstracts of the Sixth Biennial Conference on the Biology of Marine Mammals. 22-26 Nov. 1985, Vancouver, B.C.

Calambokidis, J. 1986. Population status, reproduction and mortality of Puget Sound harbor seals. Presentation to the Annual meeting of the Pacific Northwest Bird and Mammal Society, 10 May 1986, Tacoma, Wa.

Calambokidis, J., S.M. Speich, M. Witter, J. Peard, and D.W. Shea. 1987. Eggshell thinning and pathology in Puget Sound Marine Birds and their association with pollutants. Northwest Scientific Association 60th Annual Meeting. Tacoma, Washington.

Buchanan, J.B., C.T. Schick, and S.G. Herman. 1987. Organochlorine contamination in shorebirds: The significance for wintering and spring migrant falcons in western Washington. Northwest Scientific Association 60th Annual Meeting. Tacoma, Washington.

Urban, J., K.C. Balcomb, C. Alvarez, P. Bloedel, J.C. Cubbage, J. Calambokidis, and G.H. Steiger. 1987. Photo-identification matches of humpback whales (Megaptera novaeangliae) between Mexico and central California. Abstracts of the Seventh Biennial Conference on the Biology of Marine Mammals. 5-9 December, Miami, Florida.

Cubbage, J.C., J. Calambokidis, K.C. Balcomb, and G.H. Steiger. 1987. Humpback whale (Megaptera novaeangliae) distribution and abundance in the Gulf of Farallones, California. Abstracts of the Seventh Biennial Conference on the Biology of Marine Mammals. 5-9 December, Miami, Florida.

Calambokidis, J., S. Kruse, J.C. Cubbage, R. Wells, K.C. Balcomb, C. Ewald, and G.H. Steiger. 1987. Blue whale occurrence and photo-identification along the central California coast. Proceedings (Abstracts) of the Seventh Biennial Conference on the Biology of Marine Mammals. 5-9 December, Miami, Florida.

Calambokidis, J., and J. Barlow. 1987. Chlorinated hydrocarbon concentrations and their use for describing population discreetness in harbor porpoise from Washington, Oregon, and California. Second Marine Mammal Stranding Workshop, 3-5 December 1987, Miami, Florida, 1991.

Speich, S.M., J. Calambokidis, J. Peard, D.M. Fry, and M. Witter. 1988. Puget Sound Glaucous-winged Gull: biology and contaminants. Proceedings of the First Annual Meeting on Puget Sound Research, Vol. 2, pp. 598-607, Puget Sound Water Quality Authority, Seattle.

Calambokidis, J., G.H. Steiger, J.C. Cubbage, S. Kort, S. Belcher, and M. Meehan. 1988. Status of Puget Sound harbor seals: trends in populations size and contaminant concentrations. Proceedings of the First Annual Meeting on Puget Sound Research, Vol. 2, pp. 589-597, Puget Sound Water Quality Authority, Seattle.

Calambokidis, J. and B.D. McLaughlin. 1988. Harbor seal populations and their contribution to fecal coliform contamination in Quilcene Bay, Washington. Proceedings of the First Annual Meeting on Puget Sound Research, Vol. 1, pp. 300-306, Puget Sound Water Quality Authority, Seattle.

Sears, R. and J. Calambokidis. Long range movement of blue whales, Balaenoptera musculus, between central California, USA, and the Sea of Cortez, Mexico. Symposium on the Use of Non-Lethal Techniques, Especially Photo-Identification Techniques, to Estimate Cetacean Population Parameters, 29 April-1 May, La Jolla, California.

Cubbage, J.C., J. Calambokidis, G.H. Steiger, K.C. Balcomb, and P. Bloedel. 1988. Photo-identification of humpback whales, Megaptera novaeangliae, in the Gulf of the Farallones, California, with an analysis of potential sources of sample bias. Symposium on the Use of Non-Lethal Techniques, Especially Photo-Identification Techniques, to Estimate Cetacean Population Parameters, 29 April-1 May, La Jolla, California.

Calambokidis, J., G.H. Steiger, J.C. Cubbage, K.C. Balcomb, C. Ewald, S. Kruse, and R. Wells. 1988. Population size, movements, and behavior of blue whales, Balaenoptera musculus, in central California, as discerned through photo-identification. Symposium on the Use of Non- Lethal Techniques, Especially Photo-Identification Techniques, to Estimate Cetacean Population Parameters, 29 April-1 May, La Jolla, California.

Baker, C.S., S.R. Palumbi, R.H. Lambertson, M.T. Weinrich, J. Calambokidis, and S.J. O'Brien. 1989. Geographic structure of mitochondrial DNA variation in humpback whales. Abstracts of the Eighth Conference on the Biology of Marine Mammals, 7-11 December, Pacific Grove, Ca.

Steiger, G.H., J. Calambokidis, J.C. Cubbage, K.C. Balcomb, and P. Bloedel. 1989. Size and age class of blue and humpback whales in a central California feeding area. Abstracts of the Eighth Conference on the Biology of Marine Mammals, 7-11 December, Pacific Grove, Ca.

Calambokidis, J., G.H. Steiger, J.C. Cubbage, K.C. Balcomb, P. Bloedel, and D.W. Bockus. 1989. Abundance and distribution of blue and humpback whales in the Gulf of the Farallones, California. Abstracts of the Eighth Conference on the Biology of Marine Mammals, 7-11 December, Pacific Grove, Ca.

Calambokidis, J. 1990. Bacterial contamination of shellfish caused by harbor seals in Puget Sound. Presented to the Wildlife Society Conference, 28 Feb-2 Mar, Rippling River, Oregon.

Calambokidis, J., K.M. Langelier, P.J. Stacey, and R.W. Baird. 1990. Environmental contaminants in killer whales from Washington, British Columbia, and Alaska. Abstract of the Third International Orca Symposium, 9-12 March, Victoria, British Columbia.

Calambokidis, J., G.H. Steiger, D. Melvin, and M. Ramsey. 1990. Evaluation of harbor seal contributions to bacterial contamination in Puget Sound and possible solutions. Presented at the 8th Annual Pacific Rim Shellfish Sanitation Conference, 29-31 May, Portland, Oregon.

Baker, C.S., A. Baker, J. Bannister, J. Calambokidis, P. Clapham, R.H. Lambertson, S.R. Palumbi, O. Vasquez, M.T. Weinrich, and S.J. O'Brien. 1990. Worldwide population structure and mitochondrial DNA variation of humpback whales. Abstract to the Conference on Humpback Whales, Brisbane, Australia, 27-28 September.

Calambokidis, J., K.C. Balcomb, T.R. Kieckhefer, G.H. Steiger, D. Bockus, P. Bloedel, J.C. Cubbage, and J. Roletto. 1990. Wanderings of a wayward whale: resightings of Humphrey. Abstract in American Cetacean Society Fourth Biennial Conference, Monterey Bay, California.

Calambokidis, J. 1990. Chlorinated hydrocarbons in marine mammals from Puget Sound and the Northeast Pacific. Proceedings of conference on The Bioavailability of Toxic Contaminants in the San Francisco Bay/Delta, the Aquatic Habitat Institute, Richmond, California.

Calambokidis, J., J.R. Evenson, G.H. Steiger, Y. Fahoum, and M. Knox. 1991. Human disturbances of harbor seals at haul-out sites in Puget Sound. Abstracts of the Second Meeting on Puget Sound Research, Puget Sound Water Quality Authority, Seattle.

Calambokidis, J., G.H. Steiger, J.R. Evenson, J.C. Cubbage, and R.W. Osborne. 1991. Gray whales in Puget Sound and the Strait of Juan de Fuca. Proceedings of conference on the Puget Sound Research 1991. Puget Sound Water Quality Authority, Seattle.

Hahn, M.E., G.H. Steiger, J. Calambokidis, S.D. Shaw, and J.J. Stegeman. 1991. Immunochemical characterization of cytochrome P450 in harbor seals (Phoca vitulina). p. 30 in: Abstracts Ninth Biennial Conference on the Biology of Marine Mammals, Chicago, Illinois, 5-9 December 1991. Society for Marine Mammalogy, Lawrence, KA.

Steiger, G.H., J. Calambokidis, D. Melvin, and B.D. McLaughlin. 1991. Fecal coliform contamination of shellfish caused by harbor seals in Puget Sound, Washington. p. 66 in: Abstracts Ninth Biennial Conference on the Biology of Marine Mammals, Chicago, Illinois, 5-9 December 1991. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J., G.H. Steiger, and S. Becker. 1991. Trends in contaminants as determined with harbor seal neonates in Puget Sound, Washington. p. 12 in: Abstracts Ninth Biennial Conference on the Biology of Marine Mammals, Chicago, Illinois, 5-9 December 1991. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J., S. Osmek, and P. Gearin. 1993. Abundance estimates of harbor porpoise (Phocoena phooena) in Washington and Oregon waters. Presentation at the annual meeting of the Washingtong/British Columbia Chapters of the Widlife Society, 10-12 March 1993, Blaine, WA.

Osmek, S., J. Calambokidis, D. Rugh, and J. Laake. 1993. Visibility bias during aerial surveys of harbor porpoise Phocoena phocoena in Oregon and Washington. p. 83 in: Abstracts Tenth Biennial Conference on the Biology of Marine Mammals, Galveston, Texas, 11-15 November 1993.Society for Marine Mammalogy, Lawrence, KA.

Black, N.A., A. Schulman, D. Ellifrit, D. Shearwater, A. Baldridge, R.L. Ternullo, D. Goley, J. Calambokidis, and M. Webber. 1993. Photo-identifications of killer whales off California. p. 29 in: Abstracts Tenth Biennial Conference on the Biology of Marine Mammals, Galveston, Texas, 11-15 November 1993. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J., G.H Steiger, and J. Barlow. 1993. Estimates of humpback and blue whale abundance along the U.S. west coast using mark-recapture of identified individuals. p. 34 in: Abstracts Tenth Biennial Conference on the Biology of Marine Mammals, Galveston, Texas, 11-15 November 1993. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J., L.T. Findley, R.L. Brownell, and J. Barlow. 1993. Chlorinated hydrocarbon concentrations in the Gulf of California harbor porpoise (Phocoena sinus). p. 13 in: Abstracts Tenth Biennial Conference on the Biology of Marine Mammals, Galveston, Texas, 11-15 November 1993. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J. and R.W. Baird. 1994. Status of marine mammals in the Strait of Georgia, Puget Sound, and Juan de Fuca Strait and potential human impacts. Presentation to the BC/Washington Symposium on the Marine Environment, 13-14 January 1994, Vancouver, BC.

Calambokidis, J., J. Straley, S. Mizroch, and S. Cerchio. 1995. An overview of the movements of humpback whales in the North Pacific and evaluation of stock structure. Workshop to Assess Research and Other Needs and Opportunities Related to Humpback Whale Management in the Hawaiian Islands. 26-28 A[ril 1995, Kaamapali, Maui, HI.

Calambokidis, J. 1995. Contaminants in Puget Sound marine mammals: Temporal, spacial, and species-related patterns. Presentation at Puget Sound Research '95, 12-14 January 1995, Bellevue, WA. Pages 901-908 in Proceedings, Vol. 2. Puget Sound Water Quality Authority, Olympia, WA.

Calambokidis, J., G.H. Steiger, G.A. Green, and K.C. Balcomb. 1995. Biology of humpback whales off Oregon and Washington. Presentation to the Annual Meeting of the Society for Northwestern Vertebrate Biology, 23-25 March 1995, Orcas Is., WA.

Steiger, G.H. and J. Calambokidis. 1995. Evidence of predatory attacks on a humpback whales off California, Oregon, and Washington. p. 109 in: Abstracts Eleventh Biennial Conference on the Biology of Marine Mammals, Orlando, Florida, 14-18 December 1995. Society for MarineMammalogy, Lawrence, KA.

Rasmussen, K., G.H. Steiger, and J. Calambokidis. 1995. Evidence of a humpback whale wintering area in Costa Rica. p. 93 in: Abstracts Eleventh Biennial Conference on the Biology of Marine Mammals, Orlando, Florida, 14-18 December 1995. Society for Marine Mammalogy, Lawrence, KA.

Kieckhefer, T.R., J. Calambokidis, G.H. Steiger, and N.A. Black. 1995. Prey of humpback and blue whales off California based on identification of hard parts in feces. p. 62 in: Abstracts Eleventh Biennial Conference on the Biology of Marine Mammals, Orlando, Florida, 14-18 December 1995. Society for Marine Mammalogy, Lawrence, KA.

Conway, C., J. Calambokidis, G.H. Steiger, and C.S. Baker. 1995. Sex ratio of blue whales off California. p. 25 in: Abstracts Eleventh Biennial Conference on the Biology of Marine Mammals, Orlando, Florida, 14-18 December 1995. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J., R. Sears, G.H. Steiger, and J. Evenson. 1995. Movement and stock structure of blue whales in the eastern North Pacific. p. 19 in: Abstracts Eleventh Biennial Conference on the Biology of Marine Mammals, Orlando, Florida, 14-18 December 1995. Society for MarineMammalogy, Lawrence, KA.

Barlow, J., and J. Calambokidis. 1995. Abundance of blue and humpback whales in California - a comparison of mark-recapture and line-transect estimates. p. 8 in: Abstracts Eleventh Biennial Conference on the Biology of Marine Mammals, Orlando, Florida, 14-18 December 1995. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J. 1996. Marine mammal surveys off central California. Invited presentation to Monterey Bay National Marine Sanctuary Research Activity Panel. Monterey, CA. 7 June 1996.

Mate, B.R., B.A. Lagerquist, and J. Calambokidis. 1998. The movements of North Pacific blue whales off southern California and their southern fall migration. p. 87 in: Abstracts of the World Marine Mammal Science Conference, Monaco, 24-24 January 1998. Society for MarineMammalogy, Lawrence, KA.

Calambokidis, J., R.R. Reeves, R. Sears, and G.H. Steiger. 1998. Migration patterns of blue whales. p. 22 in: Abstracts of the World Marine Mammal Science Conference, Monaco, 24-24 January 1998. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J., Chandler, T.E., Costa, D.P., Clark, C.W., and H. Whitehead. 1998. Effects of ATOC sound source on the distribution of marine mammals observed from aerial surveys off central California. p. 22 in: Abstracts of the World Marine Mammal Science Conference, Monaco, 24-24 January 1998. Society for Marine Mammalogy, Lawrence, KA.

Calambokidis, J. 1998. Contaminants in Washington marine mammals: spatial, temporal and species-related patterns. Invited presentation to the Workshop on "Environmental contaminants and marine mammals health: Research applications" held 17-19 April 1998 at the Inst. Ocean Sciences, Sidney, BC.

Costa, D. and J. Calambokidis. 1999. Marine mammal research program for the Pioneer Seamount ATOC experiment. Invited presentation (by JC) to the Acoustical Society of America, Columbus, OH, 4 November 1999. Journal of the Acoustical Society of America 106:2280.

Toropova, C., G. Goley, and J. Calambokidis. 1999. Abundance, distribution, and identity of gray whales (Eschrichtius robustus) in northern California. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999.Society for Marine Mammalogy, Lawrence, KS.

Bain, D., J. Calambokidis, S. Osmek, and M. Fisher. 1999. Effects of seismic survey noise on marine mammals in the inshore waters of Washington State. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Quan, J., J. Calambokidis, D. DeMaster, and A. Olson. 1999. Management implications of a distinct feeding aggregation of gray whales in the Pacific Northwest. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Jeffries, S.J., H. Huber, J. Calambokidis and J. Laake. 1999. Status and trends in harbor seal stocks in Washington State. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Chandler, T.E., J. Calambokidis, and K. Rasmussen. 1999. Population identity of blue whales on the Costa Rica Dome. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Rasmussen, K., J. Calambokidis, G.H. Steiger, and T.E. Chandler. 1999. Central America as a significant wintering ground for North Pacific humpback whales. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Steiger, G.H., J. Calambokidis, D.K. Ellifrit, K.C. Balcomb, J.D. Darling and G.A. Green. 1999. Distribution and population structure of humpback whales off Oregon and Washington. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Calambokidis, J. 1999. Status and trends of humpback whales in the North Pacific. in: Abstracts Thirteenth Biennial Conference on the Biology of Marine Mammals, Maui, HI 28 November - 3 December 1999. Society for Marine Mammalogy, Lawrence, KS.

Calambokidis, J., S. Jeffries, and P.S. Ross. 2000. Temporal trends in contaminants in Puget Sound harbor seals. 9^th Annual Meeting of the Pacific Northwest Chapter of the Society of Environmental Toxicology and Chemistry. 11-13 May 2000, Lacey, WA.

Calambokidis, J., S. Jeffries, and P.S. Ross. 2001. Temporal trends in contaminants in Puget Sound harbor seals. Presentation and Proceedings for Conference: Puget Sound Research 2001. Puget Sound Action Team. 12-14 February 2001, Bellevue, WA.

Calambokidis, J., T. Chandler, L. Schlender, K. Rasmussen, G.H. Steiger, and N. Black. 2001. Abundance and movements of humpback and blue whales off California using photographic identification. in:  Abstracts of presentations at the Sixth Biennial Workshop on Research in the Gulf of the Farallones. Gulf of the Farallones National Marine Sanctuary. San Francisco, CA. 25 October 2001.

Chandler, T., J. Calambokidis, and R. Sears. 2001. First report on sightings of a white blue whale. in:  Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Schlender, L., J. Calambokidis, and J. Evenson. 2001. Sightings and strandings of gray whales in Puget Sound, Washington. in:  Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Rasmussen, K., J. Calambokidis, G.H. Steiger, M. Saborío, L. May, and T. Gerrodette. 2001. Extent of geographic overlap of North Pacific and South Pacific humpback whales on their Central American wintering grounds. in:  Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Calambokidis, J., J. Erickson, and E. Phillips. 2001. Sizes of whales determined from fluke photographs taken at known distances. in: Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Steiger, G.H. and J. Calambokidis. 2001. Differences in fluke coloration and rake marks in North Pacific humpback whales. in:  Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Douglas, A. and J. Calambokidis. 2001. Regional and temporal patterns of remora occurrence on blue whales in the eastern Pacific Ocean. in: Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Francis, J.,  J. Calambokidis, M. Bakhtiari, G. Marshall, M. McDonald, T. Williams, D. Gendron, and D. Croll. 2001. Deployment of an instrument package to film and record underwater behavior of blue whales.  in:  Abstracts Fourteenth Biennial Conference on the Biology of Marine Mammals, Vancouver, British Columbia. 28 November - 3 December 2001.  Society for Marine Mammalogy, Lawrence, KS.

Oleson, E.,  J. Calambokidis, S. Wiggins, M. McDonald, J. Hildebrand. Temporal Patterns in Visual and Acoustic Detection Rates of Blue Whales in the Southern California Bight. Environmental Consequences of Underwater Sound (ECOUS) Symposium. 12-16 May 2003. San Antonio, Texas.

Burgess, W.C., J. Calambokidis, E.M. Oleson, J.R. Olson, J.A. Hildebrand, and M.A. McDonald. 2003. A Miniature Acoustic Recording Tag and First Application to Northeast Pacific Blue Whales. Environmental Consequences of Underwater Sound (ECOUS) Symposium. 12-16 May 2003. San Antonio, Texas.

Calambokidis, J. E. Oleson, M. McDonald, W. Burgess, J. Francis, and J. Hildebrand. 2003. Feeding and Vocal Behavior of Blue Whales Determined Through Suction-Cup Attached Tags. Environmental Consequences of Underwater Sound (ECOUS) Symposium. 12-16 May 2003. San Antonio, Texas.

Wiggins, S.M., A.W. Sauter, J.A. Hildebrand, A.T. Abawi, M.B. Porter, P. Hursky, and J. Calambokidis. 2004. Concurrent visual and acoustic tracking of fin whales in offshore Southern California. Presentation to the 148th meeting of the Acoustical Society of America, San Diego, CA, 18 November 2004. Journal of the Acoustical Society of America 116:2607.

Oleson, E.M., J. Calambokidis, S.M. Wiggins, and J.A. Hildebrand. 2004. Blue and fin whales in the Southern California Bight: Using long-term acoustic records and acoustic recording tags. Presentation to the 148th meeting of the Acoustical Society of America, San Diego, CA, 18 November 2004. Journal of the Acoustical Society of America 116:2588.

Calambokidis, J., E.M. Oleson, W.C. Burgess, M.A. McDonald, and J.A. Hildebrand. 2004. Insights in underwater behavior of blue and fin whales from attachments of acoustic recording tags. Presentation to the 148th meeting of the Acoustical Society of America, San Diego, CA, 18 November 2004. Journal of the Acoustical Society of America 116:2613.

Calambokidis, J., E.M. Oleson, J.A. Hildebrand, J. Goldbogen, W.C. Burgess, and M.A. McDonald. 2005. Underwater behavior and vocalizations of blue, fin, and humpback whales from attachments of acoustic recording tags. Presentation to the ECOUS 2005: ONR/N45/NSF(NOPP) Marine Mammal Program Review, Arlington, VA. 16-18 March 2005.

Falcone, E.A., J. Calambokidis, G.H. Steiger, M Malleson, and J. Ford. 2005. Humpback whales in the Puget Sound/Georgia Strait Region.Proceedings of the 2005 Puget Sound Georgia Basin Research Conference, 29-31 March 2005, Seattle, WA. Proceedings available from Puget Sound Action Team, Olympia, WA (http://www.psat.wa.gov).

Calambokidis, J., S.J. Jeffries, P.S. Ross, and M. Ikonomou. 2005. Harbor seals as indicators of trends in contaminants in Puget Sound: comparison of results from two sites. Proceedings of the 2005 Puget Sound Georgia Basin Research Conference, 29-31 March 2005, Seattle, WA. Proceedings available from Puget Sound Action Team, Olympia, WA (http://www.psat.wa.gov).

Calambokidis, J. 2005. Gray whales in Puget Sounds and surrounding waters: not just migrants. Proceedings of the 2005 Puget Sound Georgia Basin Research Conference, 29-31 March 2005, Seattle, WA. Proceedings available from Puget Sound Action Team, Olympia, WA (http://www.psat.wa.gov).

Falcone, E.A., J. Calambokidis, J. Urbán R., U. González P., J.K. Jacobsen, S. Cerchio, L. Medrano G., A. Frisch Jordán, K. Rasmussen, and G.H. Steiger. Intra-population variability in migratory destinations: geographic and temporal trends in movements of humpback whales between the US west coast and eastern North Pacific breeding areas, 1986 to 2003. Abstract (Proceedings) 16^th Biennial Conference on the Biology of Marine Mammals, San Diego , CA , December 12-16, 2005.

Huggins, J.L., R.W. Baird, D.L. Webster, D.J. McSweeney, G.S. Schorr, and A.D. Ligon. 2005. Inter-island movements and re-sightings of melon-headed whales within the Hawaiian archipelago. Abstract (Proceedings) 16^th Biennial Conference on the Biology of Marine Mammals,San Diego, CA, December 12-16, 2005.

Steiger, G.H. and J. Calambokidis. 2005. Killer whale rake mark scarring on humpback whale flukes: a demographic and temporal analysis of the California-Oregon-Washington feeding aggregation. Abstract (Proceedings) 16^th Biennial Conference on the Biology of Marine Mammals,San Diego, CA, December 12-16, 2005.

Calambokidis, J., J. Barlow, E.A. Falcone, L. Schlender, A.B. Douglas, G.H. Steiger, and K.B. Ford. 2005. Changes in abundance of humpback whales off the west coast of the U.S. Abstract (Proceedings) 16^th Biennial Conference on the Biology of Marine Mammals, San Diego , CA , December 12-16, 2005.

Schorr, G.S., J. Calambokidis, E.M. Oleson, W.C. Burgess, M.A. McDonald, J. Francis, J.A. Goldbogen, and J.A. Hildebrand. 2005. Comparisons of lunge feeding behavior between blue, fin, and humpback whales. Abstract (Proceedings) 16^th Biennial Conference on the Biology of Marine Mammals, San Diego, CA, December 12-16, 2005.

Brock, K, D. Lambourn, S. Jeffries, J. Barron, J. Calambokidis, J. Huggins, S. Norman, and S. Raverty. 2006 Hydramnios in a lactating pygmy sperm whale (Kogia breviceps) stranded in Washington : post-mortem findings and implications from a stranded calf. International Association of Aquatic Animal Medicine Annual Conference, Nassau , Bahamas , May 6-10, 2006

Raverty, S, J. Calambokidis, D. Lambourn, S. Jeffries, and S. and Norman . 2006. An overview of post mortem findings of stranded grey whale (Escherichtius robustus) in Washington State, April to July, 2005. International Association of Aquatic Animal Medicine Annual Conference,Nassau , Bahamas , May 6-10, 2006

Calambokidis, J, S. Raverty , D. Lambourn, S. Jeffries, and S. and Norman. 2006. Post mortem findings of juvenile stranded grey whales (Escherichtius robustus) in the northeastern Pacific, April to May, 2005.  European Cetacean Society Meeting. Gydnia, Poland, April 2-7, 2006

Raverty, S, Etheridge, S, Hanson, M, Norman , S, Calambokidis, J, Huggins, J, Ford, J, James, E, and Grigg, M. 2007. Sarcocystosis due to Sarcocystis neurona in a stranded Pacific white-sided dolphin (Lagenorhynchus obliquidens) and harbor porpoise (Phocoena phocoena) in the Pacific Northwest. International Association of Aquatic Animal, Medicine Annual Conference, Orlando , Florida , May 5-9, 2007

Raverty, S, Zabek, E, Gaydos, J, Ross, PS, Hanson, M, Norman , S, Calambokidis, J, Ford, J, Haulena, M, Lambourn, D and Jeffries, S. 2007. An overview of Salmonella spp recovered from marine mammals, wildlife and production animals at the Animal Health Center , Abbotsford ,British Columbia from 1999 to 2006. International Association of Aquatic Animal, Medicine Annual Conference, Orlando , Florida , May 5-9, 2007

Raverty, S, Hanson, B, Lambourn D, Jeffries, S, Gaydos, J, Haulena, M, Ford, J, Calambokidis, J, and Ross, P. 2007.  Pathology of marine mammals stranded in the northeastern Pacific Ocean, 1999-2006.  American College of Veterinary Pathologists Annual Meeting.  Savannah ,Georgia , Nov 10-14, 2007

Raverty, S, Hanson, B, Huggins, J, Calambokidis, J, Hall, A, Lamborn, D, Norman, S, Gaydos, J, Ellis, G, and Ford, K.  2007. Multispecies outbreak of Cryptococcosis (Cryptococcus gatti) in stranded harbor, Dall’s porpoises and a Pacific white sided dolphin in the northeastern Pacific.  Preconference Workshop: Conservation Medicine on Marine Mammals.  Society of Marine Mammalogy, Cape Town , South Africa , November, 2007

Douglas , A, Calambokidis, J, Raverty, S, Jeffries, S, Lambourn, D, Norman, S. 2007. Ship strikes of large whales off Washington State, USA : an analysis using stranding records from 1980-2006.  Abstract (Proceedings) 17^th Biennial Conference on the Biology of Marine Mammals,Cape Town , South Africa , November 29-December 3, 2007.

Falcone, Erin A., Barlow, Jay, Burdin, Alexander M., Calambokidis, John, Clapham, Phillip, Ford, John K. B., Gabriele, Christine M., Mattila, David, Quinn, Terrance J., Rojas-Bracho, Lorenzo¹, Straley, Janice M.¹, Urbán R., Jorge¹, Wade, Paul R.^, Weller, David, Witteveen, Briana H., Yamaguchi, Manami.  2007.  Detecting Population-Level Trends in Injury and Health for Humpback Whales across the North Pacific with Flank Photos from the SPLASH Study.  Abstract (Proceedings) 17^th Biennial Conference on the Biology of Marine Mammals, Cape Town , South Africa , November 29-December 3, 2007.

Huggins, J.L., K. Wilkinson, S.A. Raverty,  M.B. Hanson,  S.A. Norman, J.K. Gaydos, D.A. Duffield, D.M. Lambourn, J. Rice, J. Calambokidis, J.B. Norberg, L.M. Barre, S.D. Reimer, T.K. Rowles, and T.R. Spradlin. 2007. Marked increase in harbor porpoise mortality in the Pacific Northwest, 2006-2007. Abstract (Proceedings) 17^th Biennial Conference on the Biology of Marine Mammals, Cape Town , South Africa ,November 29-December 3, 2007.

Calambokidis, J., J. Barlow, A.M. Burdin, P.J. Clapham, J.K.B. Ford, C.M. Gabriele, D. Mattila, T.J. Quinn, L. Rojas-Bracho, J.M. Straley, J. Urbán R., P.R. Wade, D. Weller, B.H. Witteveen, M. Yamaguchi, E.A. Falcone, J. Huggins, D. Camacho, A. Havron, K. Flynn and N. Maloney. 2007. New insights on migrations and movements of North Pacific humpback whales from the SPLASH project. Abstract (Proceedings) 17^th Biennial Conference on the Biology of Marine Mammals, Cape Town, South Africa, November 29-December 3, 2007.

Campbell, G S;S M Kerosky; D L Camacho; A M Havron; M S Soldevilla; L M Munger; A B Douglas; J Calambokidis; J A Hildebrand. 2009. Acoustic and Visual Surveys of Odontocetes from 12 line-transect surveys off Southern California 2006-2008. in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Munger, L M; G S Campbell; S Kerosky; M Soldevilla; D Camacho; A Havron; A Douglas; J Calambokidis; J Hildebrand. 2009. Cetacean visual and acoustic surveys aboard CalCOFI cruises, 2004-2008. in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Godoy-Aguilar, P; C Aguilera; J Urbán; J Calambokidis. 2009. Research on humpback whales (Megaptera novaeangliae) off Guatemala. in: Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Sremba, A; B Mate; J Calambokidis; D Steel; C S Baker. 2009. Distribution of mtDNA haplotypes in blue whale in the Southern Hemisphere and North Pacific. in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009. Society for Marine Mammalogy.

Matteson, R S; Mate, B R; Calambokidis, J. 2009. Blue whale habitat preference at the Costa Rica Dome. in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

McKenna, M F; E M Oleson; J Calambokidis; S M Wiggins; and J A Hildebrand. 2009. Noise Impact from Large Commercial Vessels on Blue Whales (Balaenoptera musculus): Communication Ranges and Sound Exposure Levels in the Santa Barbara Channel.  in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Barlow, J; Calambokidis, J; Falcone, E A; Baker, C S; Burdin, A M; Clapham, P J; Ford, J K B; Gabrielle, C M; LeDuc, R; Mattila, D K; Quinn, T J; Rojas-Bracho, L; Straley, J M; Taylor, B L; Urban R., J; Wade, P; Weller, D; Witteveen, B; Yamaguchi, M. 2009. Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Wilkin, S M; Berman-Kowalewski, M; Gulland, F; Calambokidis, J; Mate, B; McKenna, M; Collins, P; Dover, S; Rotstein, D; St. Leger, J; Senyk, N; Cordaro, J. 2009. Blue Whale Ship Strikes off Southern California.  in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Falcone, E.A., G.S. Schorr, A.B Douglas, D. L. Webster, J. Calambokidis, J. Hildebrand, R. D. Andrew, M. B. Hanson, R.W. Baird and D. Moretti.  2009.  Movements of Cuvier’s beaked whales in a region of frequent naval activity: Insights from sighting, photo-identification, and satellite tag data.  in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009. Society for Marine Mammalogy.

Douglas, A B; B K Rone; A N Zerbini; A Martinez; L J Morse; J Calambokidis; P J Clapham. 2009. Cetacean Occurrence in the Gulf of Alaska U. S. Navy Training Area and Surrounding Waters, April 2009.  in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Huggins, J L; Lambourn, D M; Raverty, S A; Walker, W A; Calambokidis, J; Baker, C. S. 2009. Who am I?: Detailed observations of a stranded Dall’s/harbor porpoise hybrid.  in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Steiger, G H; Calambokidis, J; Douglas, A E; Falcone, E A; Chandler, T E; Baker, C. S; Steele, D. 2009. Physical and behavioral characteristics and genetic confirmation of live hybrid blue-fin whales in the eastern North Pacific.  in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Calambokidis, J; Mate, B; Oleson, E; Irvine, L; Hayslip, C; Douglas, A. 2009. The Costa Rica Dome as a winter feeding and breeding areas for North Pacific blue whales. in:  Abstracts of the 18th Biennial Conference on the Biology of Marine Mammals, Quebec City, Quebec, CA. October 2009.  Society for Marine Mammalogy.

Calambokidis, J., E.M. Oleson, M. McKenna, and J. A. Hildebrand. 2009. Blue whale behavior in shipping lanes and response to ships. Presentation at 2009 ONR Marine Mammal Program Review. 7-10 December 2009. Alexandria, VA.

Calambokidis, J. 2009. Review of Critical regional threats to marine mammals. Presentation at the Southern California Marine Mammal Workshop, 9-10 January 2010, Newport Beach, CA, Sponsored by Pacific Life Foundation.

Andrews, R.D., Straley, J.M., Schorr, G.S., Thode, A.M., Calambokidis, J., Lunsford, C.R., and O’Connell, V. 2009. Satellite tracking Eastern Gulf of Alaska sperm whales: local movements around the shelf-edge contrast with rapid, long-distance migrations across stock boundaries. In:Alaska Marine Science Symposia, Anchorage, Alaska. USA.

Calambokidis, J.,  J.L. Huggins, A.B. Douglas, D.M. Lambourn, S.J. Jeffries, S.A. Norman, S. Raverty, G. Ylitalo, and B. Norberg. 2010. Temporal changes in whale strandings and human interactions in Washington State. Presentation/Proceedings of the 2010 National Marine Animal Health and Stranding Network Conference, 6-9 April 2010, Shepherdstown, WV.

Calambokidis, J. 2010. Whales of the World: New developments in whale research in the North Pacific and challenges whales face. Presentation at the American Cetacean Society 12^th International Conference, 12-14 November 2010, Monterey, CA.

Calambokidis, J. Huggins, D. Lambourn, S. Jeffries, J. Evenson, B. Diehl, J. Oliver, and B. Hanson. 2011. Changes in cetacean occurrence in the Salish Sea: Anomalous sightings in southern Puget Sound.  Proceedings of the 2011 Salish Sea Ecosystem Conference, 25-27 October 2011. Vancouver, BC.

Tyack, P.; Zimmer, W. MX; Southall, B.; Calambokidis, J.; Friedlander, A.; DeRuiter, S.L. 2011. Response of Dtagged Cuvier’s beaked whale, Ziphius cavirostris, to controlled exposure of sonar sound. Abstract (Proceedings) 19^th Biennial Conference on the Biology of Marine Mammals, Tampa, Florida, November 27-December 2, 2011.

Southall, B. L.; Calambokidis, J.; Tyack, P.; Moretti, D.; Hildebrand, J.; Kyburg, C.; Carlson, R.; Friedlaender, A.; Falcone, E.; Schorr, G.; Douglas, A.; DeRuiter, S.; Goldbogen, J.; Pusser, T.; Barlow, J. 2011. Biological and Behavioral Response Studies of Marine Mammals in southern California (SOCAL-10). Abstract (Proceedings) 19^th Biennial Conference on the Biology of Marine Mammals, Tampa, Florida, November 27-December 2, 2011.

Falcone, E.A., Schorr, G.S., Moretti, D.J., Baird, R.W., Hanson, M.B., and Andrews, R.D.. 2011.  Use of the LIMPET medium-duration satellite tag to identify areas of elevated risk for sensitive populations: fin whales (Balaeanoptera physalus) in the Southern California Bight.  In:Abstracts of the Fourth Internation Science Symposium on Bio-Logging.  Hobart, Tasmania, Australia.  14-18 March 2011

Falcone, E.A.; Schorr, G.S.; Diehl, B.; Douglas, A.B.; Calambokidis, J.; Barlow, J.; Hanson, M. B; Andrews, R.D. 2011. The Wayward Ways of the White-Jawed Whale: Following fin whales (Balaenopteraphysalus) along the US West Coast with photo-identification and satellite telemetry Abstract (Proceedings) 19^th Biennial Conference on the Biology of Marine Mammals, Tampa, Florida, November 27-December 2, 2011.

Huggins, J., J. Calambokidis, D. Lambourn, B. Diehl, J. Oliver, S. Jeffries, and S. Raverty. 2011. Tropical cetaceans in southern Puget Sound: anomalous sightings and strandings in Washington State, 2010-2011. Abstract (Proceedings) 19^th Biennial Conference on the Biology of Marine Mammals, Tampa, Florida, November 27-December 2, 2011.

Calambokidis, J., M.F. McKenna, E.M. Oleson, J. Goldbogen, and K. Stingle. 2011. Examination of blue whale vulnerability to ship strikes in the Santa Barbara Channel based on sightings, photo-ID, and multiple tag types. Scheduled talk at the 19^th Biennial Conference on the Biology of Marine Mammals.

Stimpert, AK, DeRuiter, S, Southall, B, Falcone, E, Moretti, D, Friedlaender, A, Schorr, G, Calambokidis, J. 2013. Acoustic and diving behavior of a tagged Baird’s beaked whale (Berardius bairdii) exposed to simulated sonar. Abstract (Proceedings) 20^th Biennial Conference on the Biology of Marine Mammals, Dunedin, NZ, December 2013.

Calambokidis, J. et al. 1975. Distribution and biomagnifications of polychlorinated biphenyls in the benthic community. Final report to the National Science Foundation, Washington, D.C. 41pp. 

Calambokidis, J., K. Bowman, S. Carter, J. Cubbage, P. Dawson, T. Fleischner, J. Shuett-Hames, J. Skidmore, B. Taylor, and S.G. Herman. 1978. Chlorinated hydrocarbon concentrations and the ecology and behavior of harbor seals in Washington State waters. (Select for PDF, 3 MB file) Final report to the National Science Foundation, Washington, D.C. 121pp.

Calambokidis, J. and S. Carter. 1979. Gertrude Island harbor seals: Potential human impact and the need for future protection. Report prepared for U.S. Fish and Wildlife Service, Olympia, Wa. 6pp.

Herman, S.G., J.B. Bulger and J.B. Buchanan. 1980. The Snowy Plover in southeastern Oregon and western Nevada. Final Report to U.S. Fish and Wildlife Service. 14 + vi pp.

Peard, J. and J. Calambokidis. 1981. Chlorinated hydrocarbons in humpback whales (Megaptera novaeangliae) from southeast Alaskan waters. Report to Sea Search, Juneau, AK.

Brennan, L.A., J.B. Buchanan, A.M. Cahall, M.A. Finger, T.M. Johnson, and C.T. Schick. 1984. Shorebirds and falcons: Food chain pesticide dynamics in estuarine ecosystems. Final Report to National Science Foundation (Grant No. SPI80-04768). 158pp.

Manuwal, D.A., M. Huff, J. Buchanan, and R. Lundquist. 1984. Winter distribution and abundance of bird populations of different-aged Douglas-fir forests in the southern Washington Cascades. U.S. Forest Service, Contract Number PNW-83-208. 19pp.

Cubbage, J.C., J. Calambokidis, and D.J. Rugh. 1984. Bowhead whale length measured through stereophotogrammetry. Final report contract #83-ABC-00129 to the National Marine Mammal Laboratory, Seattle, Wa. 69pp.

Calambokidis, J., J. Peard, G.H. Steiger, J.C. Cubbage, and R.L. DeLong. 1984. Chemical contaminants in marine mammals from Washington State. NOAA Technical Memorandum NOS OMS 6, National Technical Information Service, Springfield, Virginia. 167pp.

Calambokidis, J., and R.J. Peard. 1985. Chlorinated hydrocarbons in the tissues of northern fur seals from St. Paul Island, Alaska. In: Fur Seal Investigations, 1982 (P. Kozloff ed.). NOAA Technical Memorandum NMFS F/NWC-71.

Calambokidis, J., S.M. Speich, J. Peard, G.H. Steiger, J.C. Cubbage, D.M. Fry, and L.J. Lowenstine. 1985. Biology of Puget Sound marine mammals and marine birds: Population health and evidence of pollution effects. NOAA Tech. Memo. NOS OMA 18, National Technical Information Service, Springfield, Virginia. 159pp.

Calambokidis, J. 1986. Chlorinated hydrocarbons in harbor porpoise from Washington, Oregon, and California: Regional differences in pollutant ratios. Final report for Contract No. 40ABNF5 3875 from Southwest Fisheries Center, La Jolla, California. 29pp.

Duval, W.S.(ed.), L.A. Harwood, P. Norton, J. Cubbage, J. Calambokidis, G. Borstad, J. Cherniawsky, R. Kerr. 1986. Distribution, abundance, and age segregation of bowhead whales relative to industry activities and oceanographic features in the southeast Beaufort Sea, August-September 1985. Report to Environmental Studies Revolving Funds, Ottawa, Canada.

Reed, M., D. French, J. Calambokidis, and J. Cubbage. 1987. Simulation modeling of the effects of oil spills on population dynamics of northern fur seals. Final report for OCS Study MMS 86-0045 for Minerals Management Service, Anchorage, Alaska. 158pp. 

Calambokidis, J. 1987. Contaminant concentrations in northern fur seals and preliminary evaluation of risk from consumption. Final report for Purchase Order No. 40-HANF-7-00013 from the National Marine Fisheries Service, Juneau, Alaska. 26pp.

Ford, J.K.B., J.C. Cubbage, and P. Norton. Distribution, abundance, and age segregation of bowhead whales in the southeast Beaufort Sea, August-September 1986. Environmental Studies Research Funds, Report No. 089. 93pp.

Calambokidis, J., G.H. Steiger, and J.C. Cubbage. 1987. Marine Mammals in the Southwestern Strait of Juan de Fuca: Natural History and Potential Impacts of Harbor Development in Neah Bay. Final report for Contract No. DACW67-85-M-0046 from Corps of Engineers, Seattle, Washington. 103pp.

Calambokidis, J., J.C. Cubbage, K.C. Balcomb, and G.H Steiger. 1987. Research on blue whales (Balaenoptera musculus) in the Gulf of the Farallones, 1986. Final Report for Order No. PX 8140-7-0543 from National Park Service and Gulf of the Farallones National Marine Sanctuary, San Francisco, California. 30pp.

Cubbage, J.C., J. Calambokidis, K.C. Balcomb, and G.H. Steiger. 1987. Humpback whale (Megaptera novaeangliae) distribution and abundance in the Gulf of the Farallones National Marine Sanctuary. Annual Report for Contract No. CX 8000-6-0003 from National Park Service and Gulf of the Farallones National Marine Sanctuary, San Francisco, California. 53pp.

Calambokidis, J. and B. McLaughlin. 1987. Harbor seal populations and their contributions to fecal coliform pollution in Quilcene Bay, Washington. Final report for contract from Jefferson County and the Washington Department of Ecology, Olympia, Washington. 29pp.

Calambokidis, J., J.C. Cubbage, G.H. Steiger, K.C. Balcomb, and P. Bloedel. 1988. Humpback whale (Megaptera novaeangliae) distribution and abundance in the Gulf of the Farallones, 1987. Report to the National Park Service and Gulf of the Farallones National Marine Sanctuary, San Francisco, California. 65pp.

Calambokidis, J., G.H. Steiger, J.C. Cubbage, and K.C. Balcomb. 1988. Research on blue whales (Balaenoptera musculus) in the Gulf of the Farallones, 1987. Report to the National Park Service and Gulf of the Farallones National Marine Sanctuary, San Francisco, California. 47 pp.

Calambokidis, J. 1988. Chlorinated hydrocarbon concentrations in the Gulf of California harbor porpoise (Phocoena sinus). Final report for contract MM4465846-3 from the Marine Mammal Commission, Wash. D.C. 29pp.

Calambokidis, J., G.H. Steiger, and B.D. McLaughlin. 1989. Bacterial contamination related to harbor seals in Puget Sound, Washington. Final report to Jefferson County and the Washington Department of Ecology, Olympia, Washington. 74pp.

Calambokidis, J., G.H. Steiger, J.C. Cubbage, K.C. Balcomb, and P. Bloedel. 1989. Biology of humpback whales in the Gulf of the Farallones, California. Report to Gulf of the Farallones National Marine Sanctuary, San Francisco, California. 93pp.

Buchanan, J.B. and L.J. Salzer. 1989. Peregrine falcon monitoring and evaluation of potential habitat in Olympic National Forest and vicinity, with notes on the occurrence of other raptors. Report to the USDA Forest Service, Olympia, Washington. 45pp.

Calambokidis, J., G.H. Steiger, J.C. Cubbage, and K.C. Balcomb. 1989. Biology of blue whales in the Gulf of the Farallones and adjacent areas of California. Report to Gulf of the Farallones National Marine Sanctuary, San Francisco, Ca. 58pp.

Rubida, P. and J. Calambokidis. 1990. Factors affecting non-point source fecal coliform levels in the Quilcene and Dabob Bay watersheds, Jefferson County, Washington. Report to the Washington Department of Ecology, Olympia, Washington. 24pp.

Calambokidis, J., C. Ewald, G.H. Steiger, S.M. Cooper, I.D. Szczepaniak, and M.A. Webber. 1990. Harbor porpoise studies in the Gulf of the Farallones. Report to the Gulf of the Farallones National Marine Sanctuary, San Francisco, California. 58pp.

Calambokidis, J., D.J. Rugh, and S.M. Melin. In press. Land-based calibrations of harbor porpoise sightings from a vessel along the northern Washington coast. In H. Kajimura (ed.) Harbor porpoise interactions with Makah salmon set net fishery in coastal Washington waters, 1988-89. NOAA Technical Report.

Calambokidis, J. In press. Vessel surveys for harbor porpoise off the Washington coast. In H. Kajimura (ed.) Harbor porpoise interactions with Makah salmon set net fishery in coastal Washington waters, 1988- 89. NOAA Technical Report.

Calambokidis, J., G.H. Steiger, B.D. McLaughlin, and J.R. Evenson. 1990. Harbor seal haul-out habitat and the feasibility of shifting haul-out locations at Dosewallips State Park, Washington. Report to the Washington State Parks and Recreation Commission, Olympia, Washington. 70pp. 

PSEP. 1990. Recommended guidelines for sampling marine mammal tissue for chemical analyses in Puget Sound and adjacent waters. Report to U.S. EPA, Region 10, Seattle by PTI Environmental Services and Cascadia Research. Primary authors were J. Calambokidis, G.H. Steiger and D.S. Becker. 84pp.

Calambokidis, J., G.H. Steiger, J.R. Evenson, and S.J. Jeffries. 1991. Censuses and disturbance of harbor seals at Woodard Bay and recommendations for protection. Final report to the Washington Department of Natural Resources, Olympia. 44pp.

Calambokidis, J., J.R. Evenson, and G.H. Steiger. 1991. Monitoring of harbor seals at Dosewallips State Park, Washington. Report to the Washington State Parks and Recreation Commission, Olympia, Washington. 19pp.

Calambokidis, J., G.H. Steiger, L.J. Lowenstine, and D.S. Becker. 1991. Chemical contamination of harbor seal pups in Puget Sound. Report EPA 910/9-91-032 to U.S. EPA, Region 10, Seattle, Washington.

Calambokidis, J., and J. Barlow. 1991. Chlorinated hydrocarbon concentrations and their use for describing population discreetness in harbor porpoises from Washington, Oregon, and California. In (J.E. Reynolds III and D.K. Odell (eds.). Marine mammal strandings in the United States: proceedings of the Second Marine Mammal Stranding Workshop; 3-5 December 1987, Miami, Florida. NOAA Technical Report NMFS 98:101-110.

Calambokidis, J., J.B. Buchanan, G.H. Steiger, and J.R. Evenson. 1991. Toxic contaminants in Puget Sound wildlife. Report EPA910/9-91-023 to the U.S. EPA, Region 10, Seattle, Washington. 96pp.

Calambokidis, J., J.C. Cubbage, S.J. Jeffries, P. Gearin, and R. Brown. 1991. Harbor porpoise distribution and abundance estimates off Washington from aerial surveys in 1990. Report to the National Marine Mammal Laboratory, National Marine Fisheries Service, Seattle. 35pp.

Calambokidis, J., G.H. Steiger, J.R. Evenson, T.R. Kieckhefer, K.C. Balcomb, and D.E. Claridge. 1991. Research on humpback and blue whales in the Gulf of the Farallones and adjacent waters, 1989 and 1990. Report to the Gulf of the Farallones National Marine Sanctuary and Southwest Fisheries Center, National Marine Fisheries Service, La Jolla, California. 34pp.

Calambokidis, J., J.R. Evenson, J.C. Cubbage, P.J. Gearin, and S.D. Osmek. 1992. Harbor porpoise distribution and abundance off Oregon and Washington from aerial surveys in 1991. Report to the National Marine Mammal Laboratory, National Marine Fisheries Service, Seattle. 44pp.

Calambokidis, J., J.R. Evenson, and D.R. Paulson. 1992. Bird and mammal surveys after the Tenyo Maru Oil Spill, July 1991. Report to the Washington Dept. of Ecology, Olympia, Washington. 38pp.

Calambokidis, J., G.H. Steiger, and J.R. Evenson. 1992. Photographic identification and abundance estimates of humpback and blue whales off California in 1991. Report to Southwest Fisheries Center, National Marine Fisheries Service, La Jolla, California. 40pp.

Evenson, J.R., and J. Calambokidis. 1992. Monitoring of harbor seals at Dosewallips Delta and their reaction to slough barriers August 1991 to July 1992. Report to Washington State Parks and Recreation Department, Olympia, Washington. 25pp.

Varanasi, U. J.E. Sein, K.L. Tilbury, J.P. Meador, C.A. Sloan, D.W. Brown, J. Calambokidis, and S-L. Chan. 1993. Chemical contaminants in gray whales (Eschrichtius robustus) stranded in Alaska, Washington, and California, U.S.A. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-11. 115pp.

Calambokidis, J., J.R. Evenson, J.C. Cubbage, S.D. Osmek, D. Rugh, and J.L. Laake, 1993. Calibration of sighting rates of harbor porpoise from aerial surveys. Report to the National Marine Mammal Laboratory, National Marine Fisheries Service, Seattle, Washington. 41pp.

Calambokidis, J., J.C. Cubbage, J.R. Evenson, S.D. Osmek, J.L. Laake, P.J. Gearin, B.J. Turnock, S.J. Jeffries, and R.F. Brown. 1993. Abundance estimates of harbor porpoise in Washington and Oregon waters. Report to the National Marine Mammal Laboratory, National Marine Fisheries Service, Seattle, Washington. 55pp.

Evenson, J.R. 1993. Census results of 1992 winter shorebird counts from Puget Sound, Strait of Juan de Fuca, and Willapa Bay. Report to Point Reyes Bird Observatory, Stinson Beach, CA.

Calambokidis, J., J.R. Evenson, and S.J. Jeffries. 1993. Monitoring of gray whales in Puget Sound and surrounding waters, 1992. Report to Washington Department of Wildlife, Olympia, Washington as part of the Puget Sound Ambient Monitoring Program. 31pp.

Evenson, J.R., and J. Calambokidis. 1993. Monitoring of harbor seals at Dosewallips Delta September 1992 to July 1993. Report to Washington State Parks and Recreation Department, Olympia, Washington. 33pp.

Calambokidis, J., G.H. Steiger, and J.R. Evenson. 1993. Photographic identification and abundance estimates of humpback and blue whales off California in 1991-92. Report to Southwest Fisheries Center, National Marine Fisheries Service, La Jolla, California. 67pp.

Evenson, J.R. and J.B. Buchanan. 1994. Shorebird abundance at greater Puget Sound estuaries: Results from winter 1993-1994 aerial and ground-based counts. Report to Washington Department of Fish and Wildlife, Olympia, WA.

Calambokidis, J., J.R. Evenson, G.H. Steiger, and S.J. Jeffries. 1994. Gray whales of Washington State: Natural history and photographic catalog. Report to Washington Department of Fish and Wildlife, Olympia, WA.

Calambokidis, J. and R.W. Baird. 1994. Status of marine mammals in the Strait of Georgia, Puget Sound, and Juan de Fuca Strait and potential human impacts. p 282-303 In: Review of the marine environment and biota of Strait of Georgia, Puget Sound, and Juan de Fuca Strait.Proceedings of the BC/Washington Symposium on the Marine Environment, January 13 and 14, 1994. (R.C.H. Wilson, R.J. Beamish, F.Aitkens, and J. Bell, Ed.). Canadian Technical Report of Fisheries and Aquatic Sciences No. 1948.

Calambokidis, J. and G.H. Steiger. 1995. Population estimates of humpback and blue whales made through photo-identification from 1993 surveys off California. Report to Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, California. 36pp.

Calambokidis, J., G.H. Steiger, and K. Rasmussen. 1996. Humpback and blue whale photographic identification: Report of research in 1995. Final report to Monterey Bay, Channel Islands, and Olympic Coast National Marine Sanctuaries and Southwest Fisheries Science Center.Cascadia Research, 218? W Fourth Ave., Olympia, WA 98501. 37 pp.

Calambokidis, J. 1996. Gray whales in Washington State: Progress report on research in 1995. Final report to Washington Department of Fish and Wildlife, Olympia, Washington.

Calambokidis, J. and J. Quan. 1997. Gray whales in Washington State: report on research in 1996. Final report to National Marine Mammal Laboratory, Seattle, Washington. 30pp.

Calambokidis, J., T. Chandler, K. Rasmussen, G.H. Steiger, L. Schlender, D. Ellifrit, and J.L. Quan. 1997. Humpback and blue whale photographic identification: Report of research in 1996. Final report to Monterey Bay, Channel Islands, and Olympic Coast National Marine Sanctuaries, Southwest Fisheries Science Center, and University of California at Santa Cruz. Cascadia Research, 218? W Fourth Ave., Olympia, WA 98501. 40pp.

Calambokidis, J., G.H. Steiger, J.M. Straley, T.J. Quinn II, L.M. Herman, S. Cerchio, D.R. Salden, M. Yamaguchi, F. Sato, J. Urbán R., J. Jacobsen, O. von Ziegesar, K.C. Balcomb, C.M. Gabriele, M.E. Dahlheim, M. Higashi, S. Uchida, J.K.B. Ford, Y. Miyamura, P. Ladrón de Guevara P., S.A. Mizroch, L. Schlender and K. Rasmussen. 1997. Abundance and population structure of humpback whales in the North Pacific Basin. Report to Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, California. 71pp.

Calambokidis,J., L. Schlender, and J. Quan. 1998. Marine mammal observations and mitigations associated with USGS seismic surveys in the southern California Bight in 1998. Report to U.S. Geological Survey, Menlo Park, CA. Cascadia Research, 218½ W Fourth Ave., Olympia, WA  

Calambokidis, J. and S.D. Osmek. 1998.  Marine mammal research and mitigation in conjunction with air gun operation for the USGS “SHIPS” seismic surveys in 1998. Report to the U.S. Geological Survey, National Marine Fisheries Service and Minerals Management Service. 29pp.

Calambokidis, J., T. Chandler, K. Rasmussen, G.H. Steiger, and L. Schlender. 1998. Humpback and blue whale photographic identification: Report of research in 1997. Final report to Southwest Fisheries Science Center, Olympic Coast National Marine Sanctuaries, University of California at Santa Cruz, and Cornell University. Cascadia Research, 218? W Fourth Ave., Olympia, WA 98501. 41pp.

Calambokidis, J., K. Rasmussen, and G.H. Steiger. 1998. Humpback whales and other marine mammals off Costa Rica, 1996-98. Report on research during Oceanic Society Expeditions in 1998 in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 

Calambokidis, J., L. Schlender, M. Gosho, and P. Gearin. 1998. Gray whale photographic identification in 1997. Final Report to the National Marine Mammal Laboratory, Seattle, WA.

Calambokidis, J., T. Chandler, K. Rasmussen, G.H. Steiger, and L. Schlender. 1999. Humpback and blue whale photographic identification research off California, Oregon, and Washington in 1998. Final report to Southwest Fisheries Science Center, Olympic Coast National Marine Sanctuaries, and University of California at Santa Cruz. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 35pp.

Calambokidis, J., K. Rasmussen, and G.H. Steiger. 1999. Humpback whales and other marine mammals off Costa Rica, 1996-99. Report on research during Oceanic Society Expeditions in 1998 in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501

Calambokidis, J., J. Quan, L. Schlender, M. Gosho, and P. Gearin. 1999. Gray whale photographic identification in 1998. Final Report to the National Marine Mammal Laboratory, Seattle, WA.

Calambokidis, J., S.J. Jeffries, P.S. Ross, and M. Ikonomou. 1999. Temporal trends in contaminants in Puget Sound harbor seals. Final Report to U.S. EPA and Puget Sound Water Quality Action Team. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 53pp

Quan, J. and  J. Calambokidis. 1999. Marine mammal observations and mitigation associated with USGS seismic surveys in the southern California Bight in 1999. Report to U.S. Geological Survey, Menlo Park, CA. Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501. 16pp

Rasmussen, K., J. Calambokidis, and G.H. Steiger. 2000. Humpback whales and other marine mammals off Costa Rica, 1996-2000. Report on research during Oceanic Society Expeditions in 2000 in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 31pp

Rasmussen, K., J. Calambokidis, and G.H. Steiger. 2000. Humpback whales and other marine mammals off Costa Rica, 1996-2000. Report on research during Oceanic Society Expeditions in 2000 in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 31pp

Calambokidis, J., T. Chandler, K. Rasmussen, G.H. Steiger, and L. Schlender. 2000. Humpback and blue whale photographic identification research off California, Oregon, and Washington in 1999. Final report to Southwest Fisheries Science Center, Olympic Coast National Marine Sanctuaries, and Channel Islands National Marine Sanctuary. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 39pp

RAMAKRISHNAN, U.; R. G. LEDUC; J. DARLING; B. L. TAYLOR; P. GEARIN; M. GOSHO; J. CALAMBOKIDIS; R. L. BROWNELL, JR.; J. HYDE and T. E. STEEVES. 2001. Are the southern feeding group of eastern Pacific gray whales a maternal genetic isolate? Unpublished paper to the IWC Scientific Committee. London, July 2001. (SC/53/SD8).

Calambokidis, J., J. Francis, G. Marshall, D. Croll, M. McDonald, and T. Williams. 2001. Underwater behavior of blue whales using a suction-cup attached CRITTERCAM. Annual report to Office of Naval Research for Grant Number: N00014-00-1-0942.  

Calambokidis, J., T. Chandler, L. Schlender, K. Rasmussen, and G.H. Steiger. 2001. Research on humpback and blue whales off California, Oregon, and Washington in 2000.  Final report to Southwest Fisheries Science Center, La Jolla, CA.  Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501.  32pp

Rasmussen, K., J. Calambokidis, and G.H. Steiger. 2001. Humpback whales and other marine mammals off Costa Rica and surrounding waters, 1996-2001. Report of the Oceanic Society 2001 field season in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 22pp

Douglas, A. and J. Calambokidis. 2002. Marine Mammal observations associated with seismic surveys off Washington and British Columbia in May 2002. Report to U.S. Geological Survey, Menlo Park, CA. Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501.  30pp

Calambokidis, J., M. Gosho, P. Gearin, J.D. Darling, W. Megill, M. Heath, D. Goley, and B. Gisborne. 2002. Gray whale photographic identification in 2001: Collaborative research in the Pacific Northwest. Report to the National Marine Mammal Laboratory, Seattle, WA.Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501.  19pp

Calambokidis, J. 2002. Underwater Behavior of Blue Whales Using a Suction-cup Attached CRITTERCAM. Final Technical Report to Office of Naval Research for Grant Number: N00014-00-1-0942. 7pp  

Calambokidis, J., T. Chandler, and A. Douglas. 2002. Marine mammal observations and mitigation associated with USGS seismic-reflection surveys in the Santa Barbara Channel 2002. Report to U.S. Geological Survey, Menlo Park, CA. Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501.  30pp

Calambokidis, J., T. Chandler, L. Schlender, K. Rasmussen, and G.H. Steiger. 2002. Research on humpback and blue whales off California, Oregon, and Washington in 2001.  Final report to Southwest Fisheries Science Center, La Jolla, CA.  Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501.  50pp

Rasmussen, K., J. Calambokidis, and G.H. Steiger. 2002. Humpback whales and other marine mammals off Costa Rica and surrounding waters, 1996-2002. Report of the Oceanic Society 2002 field season in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 32pp

Chandler, T., and J. Calambokidis. 2003. 2002 aerial surveys for harbor porpoise and other marine mammals off Oregon, Washington, and British Columbia. Contract report to National Marine Mammal Laboratory, Seattle, WA. 25pp

Chandler, T., and J. Calambokidis. 2003. 2003 aerial surveys for harbor porpoise and other marine mammals off Oregon, Washington, and British Columbia. Contract report to National Marine Mammal Laboratory, Seattle, WA. 25pp

Calambokidis, J. 2003. Underwater behavior of blue whales examined with suction-cup attached tags. Annual Report to Office of Naval Research forGrant Number: N00014-02-1-0849. 6pp

Calambokidis, J., R. Lumper, M. Gosho, P. Gearin, J.D. Darling, W. Megill, , D. Goley, B. Gisborne, and B. Kopach. 2003. Gray whale photographic identification in 2002: Collaborative research in the Pacific Northwest. Report to the National Marine Mammal Laboratory, Seattle, WA. Cascadia Research, 218½ W Fourth Ave., Olympia, WA  98501.  19pp

Calambokidis, J., T. Chandler, L. Schlender, G.H. Steiger, and A. Douglas. 2003. Research on humpback and blue whales off California, Oregon, and Washington in 2002.  Final report to Southwest Fisheries Science Center, La Jolla, CA.  Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501.  47pp

Baird, R.W., D.J. McSweeney, D.L. Webster, A.M. Gorgone and A.D. Ligon. 2003. Studies of odontocete population structure in Hawaiian waters: results of a survey through the main Hawaiian Islands in May and June 2003. Report prepared under Contract No. AB133F-02-CN-0106 from the National Oceanic and Atmospheric Administration, Western Administrative Support Center, 7600 Sand Point Way N.E., Seattle, WA 98115 USA

Rasmussen, K., J. Calambokidis, and G.H. Steiger. 2004. Humpback whales and other marine mammals off Costa Rica and surrounding waters, 1996-2003. Report of the Oceanic Society 2002 field season in cooperation with Elderhostel volunteers. Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501. 23pp

Baird, R.W., D.J. McSweeney, A.D. Ligon and D.L. Webster. 2004. Tagging feasibility and diving of Cuvier's beaked whales (Ziphiuscavirostris) and Blainville's beaked whales (Mesoplodon densirostris) in Hawai'i. Report prepared under Order No. AB133F-03-SE-0986 to the Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla.

Baird, R.W., and M.B. Hanson. 2004. Diet studies of "southern resident" killer whales: prey sampling and behavioral cues of predation. Report prepared as partial fulfillment of Order No. AB133F-030SE-1070 from the National Oceanic and Atmospheric Administration, Seattle, WA.

Chandler, T.E. and J. Calambokidis. 2004. Costa Rica Dome blue whale cruise report. Unpublished report, Available from Cascadia Research (www.cascadiaresearch.org). 6 pp.

Calambokidis, J., T. Chandler, E. Falcone, and A. Douglas. 2004. Research on large whales off California, Oregon, and Washington: Annual report for 2003.  Final report to Southwest Fisheries Science Center, La Jolla, CA.  Cascadia Research, 218½ W Fourth Ave., Olympia, WA 98501.  48pp

Calambokidis, J., R. Lumper, J. Laake, M. Gosho, and P. Gearin. 2004. Gray whale photographic identification in 1998-2003: Collaborative research in the Pacific Northwest. Final report to National Marine Mammal Laboratory, Seattle, WA. Available from Cascadia Research (www.cascadiaresearch.org), 218½ W Fourth Ave., Olympia, WA  98501.  48pp

Baird, R.W., A.M. Gorgone, D.L. Webster, D.J. McSweeney, J.W. Durban, A.D. Ligon, D.R. Salden, and M.H. Deakos. 2005. False killer whales around the main Hawaiian islands: an assessment of inter-island movements and population size using individual photo-identification.Report prepared under Order No. JJ133F04SE0120 from the Pacific Islands Fisheries Science Center, National Marine Fisheries Service.

Baird, R.W. 2006. Hawai‘i’s other cetaceans. Whale and Dolphin Magazine 11:28-31.

Baird, R.W., G.S. Schorr, D.L. Webster, S.D. Mahaffy, A.B. Douglas, A.M. Gorgone, and D.J. McSweeney. 2006. A survey for odontocete cetaceans off Kaua'i and Ni'ihau, Hawai'i, during October and November 2005: evidence for population structure and site fidelity. Report to Pacific Islands Fisheries Science Center, NOAA Fisheries, under Order No. AB133F05SE5197 with additional support from the Marine Mammal Commission and Dolphin Quest.

Baird, R.W., G.S. Schorr, D.L. Webster, D.J. McSweeney, and S.D. Mahaffy. 2006. Studies of beaked whale diving behavior and odontocete stock structure in Hawai'i in March/April 2006. Report prepared under contract No. AB133F-06-CN-0053 to Cascadia Research from the Southwest Fisheries Science Center, NMFS, La Jolla, CA.

Rasmussen, K. 2006. Comparison of two distinct humpback whale populations (Megaptera novaeangliae) off Pacific Central American waters. Master of Science Thesis, San Francisco State University.

Hildebrand, J., M.A. McDonald, J. Calambokidis, and K Balcomb. 2006. Whale watch vessel ambient noise in the Haro Strait. Joint Inst. For Marine Observations Report on cooperative agreement NA17RJ1231. MPL TM-490. August 2006, 24 pp.

Oleson, E.M., J.A. Hildebrand, J, Calambokidis, G, Schorr, and E. Falcone. 2007. 2006 Progress Report on Acoustic and Visual Monitoring for Cetaceans along the Outer Washington Coast. Report NPS-OC-07-003 to Naval Postgraduate School, Monterey, Ca. 30pp.

Calambokidis, J. 2007. Summary of collaborative photographic identification of gray whales from California to Alaska for 2004 and 2005.Contract report to National Marine Mammal Laboratory, Seattle, WA 98115.  

Calambokidis, J., A Douglas, E Falcone, and L Schlender.  2007. Abundance of blue whales off the US West Coast using photo identification. Final report to SWFSC. 13pp.  Available from www.cascadiaresearch.org

Cascadia Research. 2007. Status of humpback whales and human impacts. Final Programmatic Report to US Fish and Wildlife Foundation for project #2003-0170-019. 18p.

Calambokidis, J. 2008. Summary of collaborative photographic identification of gray whales from California to Alaska for 2006. Final report to National Marine Mammal Laboratory, Seattle, WA. Available from Cascadia Research (www.cascadiaresearch.org), 218½ W Fourth Ave., Olympia, WA  98501. 

Calambokidis, J., E.A. Falcone, , T.J. Quinn, A.M. Burdin, P.J. Clapham, J.K.B. Ford, C.M. Gabriele, R. LeDuc, D. Mattila, L. Rojas-Bracho, J.M. Straley, B.L. Taylor, J. Urbán R., D. Weller, B.H. Witteveen, M. Yamaguchi, A. Bendlin, D. Camacho, K. Flynn , A. Havron,  J. Huggins, N. Maloney,  J. Barlow, and P.R. Wade. 2008. SPLASH: Structure of Populations, Levels of Abundance and Status of Humpback Whales in the North Pacific. Final report for Contract AB133F-03-RP-00078 prepared by Cascadia Research for U.S. Dept of Commerce. May 2008.

Calambokidis, J., J. Huggins, S. Jefferies, D. Lambourn. 2008. Cetacean stranding response in Washington with special attention to gray whales and harbor porpoise. Final report for Prescott Grant NA04NMF4390016 prepared by Cascadia Research for the National Marine Fisheries Service. March 2008.

Calambokidis, J., J. Huggins, S. Jefferies, D. Lambourn. 2008. Trends, spatial distribution, and health effects of contaminants on Washington pinnipeds. Final report for Prescott Grant NA04NMF4390052 prepared by Cascadia Research for the National Marine Fisheries Service. March 2008.

Baker, C.S., D. Steel, J. Calambokidis, J. Barlow, A.M. Burdin, P.J. Clapham, E.A. Falcone, J.K.B. Ford, C.M. Gabriele, U. Gozález-Peral, R. LeDuc, D. Mattila, T.J. Quinn, L. Rojas-Bracho, J.M. Straley, B.L. Taylor, J. Urbán-R., M. Vant, P. Wade, D. Weller, B.H. Witteveen, K. Wynne and M. Yamaguchi. 2008. geneSPLASH: An initial, ocean-wide survey of mitochondrial (mt) DNA diversity and population structure among humpback whales in the North Pacific. Final report for Contract 2006-0093-008 to the National Fish and Wildlife Foundation. (See also SPLASH summary at Cetacean Conservation Genetics Lab of the Marine Mammal Institute at OSU)

Rone, B., A. Douglas, P. Clapham, A. Martinez, L. Morse and J. Calambokidis. 2009. Cruise Report for the April 2009 gulf of Alaska Line-Transect Survey (GOALS) in the Navy Training Excise Area. Report issued by National Marine Mammal Laboratory and Cascadia Research. Naval Postgraduate School Tech Report # NPS-OC-09-007. (See Rone et al. 2010 for final publication of this work).

Rone, B.K., A.B. Douglas, P. Clapham, A. Martinez, L.J. Morse, A.N. Zerbini, and J Calambokidis. 2009. Final report for the April 2009 Gulf of Alaska line-transect survey (GOALS) in the Navy training exercise area. For Contract N00244-09-P-0960 from Naval Postgraduate School with funding from N45. October 2009.(See Rone et al. 2010 for final publication of this work).

Oleson, E.M., J. Calambokidis, E. Falcone, G. Schorr, and J.A. Hildebrand. 2009. Acoustic and visual monitoring of cetaceans along the outer Washington Coast. Technical Report for grant N0002407WX12527. Report # NPS-OC-09-001 issued by Naval Postgraduate School, Monterey, California. 45 pp.  

Oleson, E.M., J. Calambokidis, and J.A. Hildebrand. 2009. Blue Whale Behavioral Response Study & Field Testing of the New Bioacoustic Probe. Annual Report to ONR on Award Number N000140811221.

Calambokidis, J. 2009. Abundance estimates of humpback and blue whales off the US West Coast based on mark-recapture of photo-identified individuals through 2008. Report # PSRG-2009-07 to Pacific Scientific Review Group, San Diego, CA 3-5 November 2009.

Calambokidis, J., E. Falcone, A. Douglas, L. Schlender, and J. Huggins. 2009. Photographic identification of humpback and blue whales off the US West Coast: Results and updated abundance estimates from 2008 field season. Final Report for contract AB133F08SE2786 from Southwest Fisheries Science Center, La Jolla, CA.

Calambokidis, J., A. Klimek, and L. Schlender. 2009. Summary of collaborative photographic identification of gray whales from California to Alaska for 2007. Final Report for Purchase Order AB133F-05-SE-5570. 

Calambokidis, J., E.M. Oleson, and M.F. McKenna. 2009. Examination of blue whale occurrence, behavior, and reaction to ships in and around shipping lanes and insights into ship strikes 2007-2009. Final Report for NMFS Contract Number: DG133F08SE4653.

Baird, R.W. 2009. A review of false killer whales in Hawaiian waters: Biology, status, and risk factors. Report prepared for the U.S. Marine Mammal Commission under Order No. E40475499. 23 December 2009.